Maksudul Alam

Maksudul Alam

Postdoctoral Research Associate

Bio

I received my Ph.D. in Computer Science, from Virginia Tech in 2016, with Prof. Madhav Marathe. I work in the Discrete Computing Systems Group at Oak Ridge National Laboratory.

Projects

  • DeepEx
  • CloneX
  • MutEnt
  • Atom AI
  • cuPPA

Publications

Book Chapters:

  • Adria Carbo, Andrew Leber, Casandra Philipson, Josep Bassaganya-Riera, Kate Wendelsdorf, Keith Bisset, Madhav Marathe, Maksudul Alam, Monica Viladomiu, Pawel Michalak, Pinyi Lu, Raquel Hontecillas, Stefan Hoops, Stephen Eubank, Vida Abedi, and Xinwei Deng, "Computational Immunology: Models and Tools", Elsevier, 2015.
  • Maksudul Alam, Shaikh Arifuzzaman, Hasanuzzaman Bhuiyan, Maleq Khan, V.S. Anil Kumar, and Madhav Marathe, "Parallel Graph Algorithms, chapter Distributed Memory Parallel Algorithms for Massive Graphs", CRC Press / Taylor & Francis, 2015.

Journals:

  • Maksudul Alam, Xinwei Deng, Casandra Philipson, Josep Bassaganya-Riera, Keith Bisset, Adria Carbo, Stephen Eubank, Raquel Hontecillas, Stefan Hoops, Yongguo Mei, Vida Abedi, and Madhav Marathe, "Sensitivity Analysis of an ENteric Immunity SImulator (ENISI)-based Model of Immune Responses to Helicobacter pyloriInfection", PLoS ONE, 2015.
  • Maksudul Alam and Maleq Khan, "Parallel Algorithms for Generating Massive Random Networks with Given Degree Sequences",  International Journal of Parallel Programming, 2015.
  • Md. Shamsuzzoha Bayzid, Maksudul Alam, Abdullah Mueen, and Md. Saidur Rahman, "HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction", ISRN Bioinformatics, 2013.
  • Adria Carbo, Josep Bassaganya-Riera, Mireia Pedragosa, Monica Viladomiu, Madhav Marathe, Stephen Eubank, Katherine Wendelsdorf, Keith Bisset, Stefan Hoops, Xinwei Deng, Maksudul Alam, Barbara Kronsteiner, Yongguo Mei, Raquel Hontecillas, "Predictive Computational Modeling of the Mucosal Immune Responses during Helicobacter pylori Infection",  PLoS ONE, 2013.
  • Katherine Wendelsdorf, Maksudul Alam, Josep Bassaganya-Riera, Keith Bisset, Stephen Eubank, Raquel Hontecillas, Stefan Hoops, and Madhav Marathe, "ENteric Immunity SImulator: A Tool for In Silico Study of Gastroenteric Infections", IEEE Transactions on NanoBioscience, 2012.

Conference:

  • Maksudul Alam and Kalyan S. Perumalla, "GPU-based Parallel Algorithm for Generating Massive Scale-free Networks Using the Preferential Attachment Model",  Big Data, 2017.
  • Maksudul Alam, Srikanth Yoginath, and Kalyan Perumalla, "Performance of Point and Range Queries using Radix Tree on GPUs", DSS, 2016.
  • Maksudul Alam, Maleq Khan, Anil Vullikanti, and Madhav Marathe, "An Efficient and Scalable Algorithmic Method for Generating Large-Scale Random Graphs", Supercomputing, 2016.
  • Maksudul Alam and Maleq Khan, "Parallel Algorithm for Generating Massive Random Networks with a Given Sequence of Expected Degrees", The 12th Annual IFIP International Conference on Network and Parallel Computing, 2015.
  • Sherif Abdelhamid, Maksudul Alam, Richard Alo, Shaikh Arifuzzaman, Pete Beckman, Tirtha Bhattacharjee, Hasanuzzaman Bhuiyan, Keith Bisset, Stephen Eubank, Albert Esterline, Edward Fox, Geoffrey Fox, S M Shamimul Hasan, Harshal Hayatnagarkar, Maleq Khan, Chris Kuhlman, Madhav Marathe, Natarajan Meghanathan, Henning S Mortveit, Judy Qiu, S S Ravi, Zalia Shams, Ongard Sirisaengtaksin, Samarth Swarup, V.S. Anil Kumar, and Tak-Lon Wu, " CINET 2.0: A CyberInfrastructure for Network Science", The 10th IEEE International Conference on e-Science, 2014.
  • Maksudul Alam, Maleq Khan, and Madhav V. Marathe, "Distributed-memory parallel algorithms for generating massive scale-free networks using preferential attachment model",  International Conference for High Performance Computing, Networking, Storage and Analysis (Super Computing), 2013.
  • Keith R. Bisset, Maksudul Alam, Josep Bassaganya-Riera, Adria Carbo, Stephen Eubank, Raquel Hontecillas, Stefan Hoops, Yongguo Mei, Katherine V. Wendelsdorf, Dawen Xie, Jae-Seung Yeom, and Madhav V. Marathe, "High-Performance Interaction-Based Simulation of Gut Immunopathologies with ENteric Immunity Simulator (ENISI)", The 26th IEEE International Parallel and Distributed Processing Symposium, 2012.
  • Md. Shamsuzzoha Bayzid, Maksudul Alam, and Md. Saidur Rahman, "A Heuristic Algorithm for Minimum Conflict Individual Haplotyping", The conference on BioMedical Engineering and Informatics (BMEI), 2010.
  • Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Maksudul Alam, and Md. Saidur Rahman, "A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction", The conference on BioMedical Engineering and Informatics (BMEI), 2008.
 

Technical Reports

  • Maksudul Alam and Kalyan S. Perumalla, "Generating Billion-Edge Scale-Free Networks in Seconds: Performance Study of a Novel GPU-based Preferential Attachment Model",  Oak Ridge National Laboratory, 2017.
  • Maksudul Alam, Kalyan S. Perumalla, and Devin S. White, "Computational Speed and Matching Quality using an Upper Bound on the Normalized Mutual Information", Oak Ridge National Laboratory, 2017.
  • Maksudul Alam and Maleq Khan, "Efficient algorithms for generating massive random networks", Technical Report 13-064, NDSSL at Virginia Tech, 2013.

Others:

  • Maksudul Alam and Maleq Khan, "Parallel Algorithm for Generating Massive Random Networks with a Given Sequence of Expected Degrees", CoRR (Computing Research Repository), 2014.
  • Maksudul Alam, Maleq Khan, and Madhav Marathe, "Parallel algorithms for generating massive random networks",  Poster presented at 2014 Google PhD Summit, February 25, Washington, D.C., 2014.
  • Maksudul Alam, Josep Bassaganya-Riera, Keith Bisset, Adria Carbo, Raquel Hontecillas, Stefan Hoops, Yongguo Mei, Katherine Wendelsdorf, Dawen Xie, Jae-Seung Yeom, and Madhav Marathe, "ENteric Immunity SImulator: A Tool for in silico Study of Mucosal Immune Responses", Poster presented at the Symposium on Modeling Immune Responses from Complex Data, University of Rochester, 2012.

Please see my research at Google Scholar.

Facilities Used

Contact Information