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Characterizing output bottlenecks in a supercomputer...

Publication Type
Conference Paper
Book Title
SC Conference on High Performance Computing Networking, Storage and Analysis
Publication Date
Publisher Location
Los Alamos, California, United States of America
Conference Name
IEEE/ACM SC Conference on High Performance Computing Networking, Storage and Analysis
Conference Location
Salt Lake City, Utah, United States of America
Conference Sponsor
IEEE/ACM
Conference Date
-

Supercomputer I/O loads are often dominated by writes. HPC (High Performance Computing) file systems are designed to absorb these bursty outputs at high bandwidth through massive parallelism. However, the delivered write bandwidth often falls well below the peak. This paper characterizes the data absorption behavior of a center-wide shared Lustre parallel file system on the Jaguar supercomputer. We use a statistical methodology to address the challenges of accurately measuring a shared machine under production load and to obtain the distribution of bandwidth across samples of compute nodes, storage targets, and time intervals. We observe and quantify limitations from competing traffic, contention on storage servers and I/O routers, concurrency limitations in the client compute node operating systems, and the impact of variance (stragglers) on coupled output such as striping. We then examine the implications of our results for application performance and the design of I/O middleware systems on shared supercomputers.