Jerry M Parks Group Leader, Molecular Biophysics Contact parksjm@ornl.gov | 865.574.9259 All Publications AF2Complex predicts direct physical interactions in multimeric proteins with deep learning Targeted isolation and cultivation of uncultivated bacteria by reverse genomics... Direct visualization of critical hydrogen atoms in a pyridoxal 5′-phosphate enzyme... Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crysta... The Genetic and Enzymatic Basis of Bacterial Mercury Methylation... Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum... Neutron diffraction from a microgravity-grown crystal reveals the active site hydrogens of the internal aldimine form of tryptophan synthase Predicted structural proteome of Sphagnum divinum and proteome-scale annotation... Conformational restriction shapes the inhibition of a multidrug efflux adaptor protein... HLA-Clus: HLA class I clustering based on 3D structure Transcriptional Control of hgcAB by an ArsR-Like Regulator in Pseudodesulfovibrio mercurii ND132 Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2... SARS-CoV2 Billion-Compound Docking... HLA Class I Supertype Classification Based on Structural Similarity An N⋯H⋯N low-barrier hydrogen bond preorganizes the catalytic site of aspartate aminotransferase to facilitate the second... Analysis of Orthogonal Efflux and Permeation Properties of Compounds Leads to the Discovery of New Efflux Pump Inhibitors Core cysteine residues in the Plasminogen-Apple-Nematode (PAN) domain are critical for HGF/c-MET signaling OpenMDlr: Parallel, open-source tools for general protein structure modeling and refinement from pairwise distances... Property space mapping of Pseudomonas aeruginosa permeability to small molecules Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor... Modeling protein structures from predicted contacts with modern molecular dynamics potentials: accuracy, sensitivity, and ref... Lpp positions peptidoglycan at the AcrA-TolC interface in the AcrAB-TolC multidrug efflux pump Mechanistic Duality of Bacterial Efflux Substrates and Inhibitors: Example of Simple Substituted Cinnamoyl and Naphthyl Amide... Pretreatment with Sodium Methyl Mercaptide Increases Carbohydrate Yield during Kraft Pulping Mechanistic Investigation of Dimethylmercury Formation Mediated by a Sulfide Mineral Surface Pagination Current page 1 Page 2 Page 3 … Next page ›› Last page Last » Key Links Curriculum Vitae Google Scholar ORCID LinkedIn Organizations Biological and Environmental Systems Science Directorate Biosciences Division Biocomputing and Information Section Molecular Biophysics Group
