Links to Systems Genetics

Links to System Genetics (genome to phenome)

The Basics
Model Organisms
General Tools
NCBI Home Page - Link to many databases and applications
OMIM
Gene Cards (Weizmann Inst.)
NCIBI Tools
Biology Workbench
Swami - the Next Generation Biology Workbench
Systems Biology Workbench
Meta level
MetaCyc Universe
Genome
Entrez (see link to instructions below)
Entrez Genome
Genome Channel
GEO -Gene Expression Omnibus
GeneNetwork
geWorkbench
Gaggle
Geese (components) of Gaggle
KEGG: Kyoto Encyclopedia of Genes and Genomes
GenomeNet
AceDB - originally developed for the C.elegans genome
Networks
Cytoscape
Transcriptome-Proteome
Vanderbilt Microarray Shared Resource
BioBase - Biological Databases
Open Proteomics Database
ExPASy Proteomics Server
Protein Structure and Visualization
NCBI Molecular Modeling Database (MMDB)
MMDB Structure
World Wide Protein Data Bank
RCSB Protein Data Bank
Protein Data Bank - Japan
Viewer: RASMOL
Viewer: Cn3D v4.1
Metabolome and Pathways
Metabolomics Toolbox
KEGG: DBGET
KEGG: ShowPathway Example: Cell Cycle
Reactome
Metabolic Pathways of Biochemistry
Main Metabolic Pathways on Internet
Signaling Gateway
Alliance for Cell Signaling
EcoCyc
GenomeNet
ShowPathway Example: Cell Cycle
MetaCyc Universe
Neurosceinces
Neurosciences Database Gateway
Biomedical Informatics Research Network (BIRN)
BIRN Map
Mouse Brain Library
Mouse Brain Atlases
University of Tennessee Neurosciences Center
Places
Systems Genetics at ORNL
NIH PubMed
Instructionrs on using PubMed and Entrez
Disease and Public Health
BioHealthBase: genomic and proteomic data for pathogenic organism
Citations and Literature
citeulike - A free online service to organise your academic papers
Assembled by Richard C. Ward, Oak Ridge National Laboratory
Date: 8 September 2008