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Zhou JZ, Kang S, Schadt CW, and CT Garten. (2008) Spatial Scaling of Functional Gene Diversity across Various Microbial Taxa. Proceedings of the National Academy of Sciences, 105:7768-7773.
Baker SE, Thykaer J, Adney WS, Brettin TS, Brockman FJ, D'haeseleer P, Diego A Martinez, Miller RM, Rokhsar DS, Schadt CW, Torok T, Tuskan G, Bennett J, Berka RM, Briggs SP, Heitman J, Taylor J, Turgeon BG, Werner-Washburne M and ME Himmel. (2008) Fungal Genome Sequencing and Bioenergy. Fungal Biology Reviews. 22:1-5.
Porter TM*, Schadt CW*, Rizvi L, Martin AP; Schmidt SK; Scott-Denton L; Vilgalys R, and JM Moncalvo. (2008) Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Molecular Phylogenetics and Evolution. 46:635-644 (*Equal Contribution)
Madden AS, Palumbo AV, Ravel B, Vishnivetskaya TA, Phelps TJ, Schadt CW, and CC Brandt (2008) Donor-dependent extent of uranium reduction for bioremediation of contaminated sediment microcosms, Journal of Environmental Quality, IN PRESS.
Schmidt SK, Wilson K, Meyer AF, Schadt CW, Porter TM and JM Moncalvo. (2008) The Missing Fungi - New Insights from Culture-Independent Molecular Studies of Soil. In: Accessing Uncultivated Microorganisms (K. Zengler, ed) American Society for Microbiology Press, Washington DC.
Keller M, Schadt CW and AV Palumbo. (2008) Single Cell Genomics. In: Accessing Uncultivated Microorganisms (K. Zengler, ed) American Society for Microbiology Press, Washington DC.
Schmidt SK, Sobieniak-Wiseman LC, Kageyama SA, Halloy SRP and CW Schadt. (2008) Mycorrhizal and dark-septate fungi in plant roots above 4720 meters elevation in the Andes and Rocky Mountains. Arctic, Antarctic and Alpine Research. IN PRESS
Nemergut DR, Townsent AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN and SK Schmidt. (2008) The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: Implications for carbon and nitrogen cycling. Environmental Microbiology, IN PRESS.
2007
He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Wu WM, Gu B, Jardine P, Criddle CS, and J-Z Zhou. (2007) GeoChip: A novel comprehensive microarray for investigating biogeochemical and environmental processes. ISME Journal 1:67-77
Garten CT, Kang SH, Schadt CW, Brice DJ, and J-Z Zhou. (2007) Variability in Forest Soil Properties and Processes at Spatial Scales from One Meter to One Kilometer. Soil Biology and Biogeochemistry, 39:2621-2627.
Gao H, Yang ZK, Gentry TJ, Wu L, Schadt CW, and J-Z Zhou. (2007). Microarray-based Analysis of Microbial Community RNAs by Whole Community RNA Amplification (WCRA). Applied and Environmental Microbiology, 73:563-571.
Gentry TJ, Schadt CW, He Z, and J Zhou. (2007) Functional Gene Arrays for Microbial Community Analysis. In: Manual of Environmental Microbiology (Crawford et al., eds) American Society for Microbiology Press, Washington DC.
Schadt CW, Classen AT. (2007) Book Review: Soil Microbiology, Ecology and Biochemistry.: EA Paul (ed). Soil Sci Soc Am Journal, 71:1420
Luo, F., Y. F. Yang, C. F. Chen, R. Chang, J. Z. Zhou, and R. H. Scheuermann. 2007. Modular organization of protein interaction networks. Bioinformatics 23:207-214.
2006
Rodríguez-Martínez EM, Pérez EX, Schadt CW, Zhou J, and A Massol-Deyá. (2006) Microbial Diversity and Bioremediation of a Hydrocarbon-Contaminated Aquifer in Vega Baja, Puerto Rico. International Journal of Environmental Research and Public Health, 3:292-300
Gentry TJ, Wickham, GS, Schadt CW, He Z, and J Zhou. (2006) Microarray Applications in Microbial Ecology Research. Microbial Ecology, 52:159-175.
Hwang C, Wu WM, Gentry TJ, Carley J, Schadt CW, Carroll SL, Watson D, Jardine PM, Zhou J, Hickey RF, Criddle CS, and MW Fields. (2006) Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor, Applied Microbiology and Biotechnology, 71:748-760
Wu L, Liu X, Schadt CW, and J Zhou. (2006) Microarray-based analysis of subpicogram quantities of microbial community DNA. Applied and Environmental Microbiology, 72:4931-4941.
Liebich J., Schadt CW, Chong SC, Rhee SK, and J Zhou. (2006) Improvement of oligonucleotide probe design criteria for the development of functional gene microarrays for environmental applications. Applied and Environmental Microbiology, 72:1688-1691
Schadt CW and J Zhou. Advances in Microarrays for Soil Microbial Community Analyses. (2006) In Soil Biology Volume8: Nucleic Acids and Proteins in Soil (Nannipieri, P. & Smalla K., eds). Springer-Verlag, Pp189-203.
Brown, S. D., M. Martin, S. Deshpande, S. Seal, K. Huang, E. Alm, Y. F. Yang, L. Y. Wu, T. F. Yan, X. D. Liu, A. Arkin, K. Chourey, J. Z. Zhou, and D. K. Thompson. 2006. Cellular response of Shewanella oneidensis to strontium stress. Applied and Environmental Microbiology 72:890-900.
Luo, F., J. X. Zhong, Y. F. Yang, and J. Z. Zhou. 2006. Application of random matrix theory to microarray data for discovering functional gene modules. Physical Review E 73.
2005
Schadt CW, Leibich J, Chong SC, Gentry TJ, He Z, Pan H, and J Zhou. (2005) Design and Use of Functional Gene Microarrays (FGAs) for the Characterization of Microbial Communities. In Methods in Microbiology Volume 33: Microbial Imaging (Savidge & Pothoulakis, eds). Academic Press Pg331-368
2004
Meyer AF, Lipson DA, Martin AP, Schadt CW, and SK Schmidt. (2004) Molecular and metabolic characterization of cold tolerant, alpine soil Psuedomonas sensu stricto. Applied and Environmental Microbiology. 70:483-489
2003
Schadt CW, Martin AP, Lipson DA and SK Schmidt. (2003) Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science 301:1359-1361 (>100 citations)
Older
Lipson DA, Schadt CW and SK Schmidt. (2002) Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt. Microbial Ecology 43:307-314.
Schadt CW, Mullen RB and SK Schmidt. (2001) Isolation and phylogenetic identification of a dark septate endophyte of the alpine plant Ranunculus adoneus. New Phytologist 150:747-754.
Lipson DA, Schadt CW, Schmidt SK and RK Monson. (1999) Ectomycorrhizal transfer of amino acid-nitrogen to the alpine sedge Kobresia myosuroides. New Phytologist 142:163-167.
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