Contents

Abstracts from other meetings.

Speakers

DICKINSON: Evolutionary perspectives on functional analysis: some cautionary tales

W. J. (Joe) Dickinson

RINGWALD: Gene expression database for the laboratory mouse

M. Ringwald, Jon Beal, D. Begley, G. Davis, J. T. Eppig, K. Frazer, D. Hill, J. Kadin, J. Richardson, M. Sasner, L. Trepanier

OHARA: Analysis of uncharacterized human cDNAs which encode large proteins in brain: The Kazusa Approach

Osamu Ohara

HEISS: Functional characterisation of genes in Xq28

Nina S. Heiss, Zdenek Sedlacek, Annemarie Poustka

BERNARDI: The formation and maintenance of the isochores from the genomes of warm-blooded vertebrates is due to natural selection

Giorgio Bernardi

KOHARA: Post-genomics strategies in C. elegans toward understanding of the molecular mechanisms of development

Yuji Kohara

GARDINER: Genomic sequence analysis and novel gene characterization on human chromosome 21

Katheleen Gardiner, Dobromir Slavov, Roger Lucas, Andrew Fortna and Alla Rynditch

FREEMAN: Development of expression profiling technologies for the rat

Tom Freeman, David Vetrie, Clare East, Adam Butler, Liz Campbell and Peter Wooding

DURET: Codon usage in animals and plants: new data, new paradox

Laurent Duret and Dominique Mouchiroud

THIESEN: Genomic sequences of KOX zinc finger gene clusters are used to determine (auto) regulatory networks of gene regulation

Dirk Koczan, Christian Sina, Peter Lorenz, Tom Hearn, Saleh Ibrahim, Andreas Rump, Andre Rosenthal, Michael Jackson, M.-F. Rousseau-Merck,  I. Legrand, and Hans-Juergen Thiesen

EISEN: Phylogenomics and the benefits of an evolutionary perspective in genome analysis

Jonathan A. Eisen

PELTZ: Understanding the role of mRNA turnover in regulating gene expression and in disease states

Stuart Peltz

EMANUELSSON: Identifying localization signals in proteins

Olof Emanuelsson

KORN: Tools for functional analysis using resources of RZPD

B. Korn^{1, 2}, J. Boer, P. Kioschis^1,2, A. Vente, H. Lehrach^3,4 and A. Poustka^1,2

WASSERMAN: De novo discovery of transcription factor binding sites in co-regulated sets of human genes

Wyeth W. Wasserman

FONTES: Using large cloned genomic fragments as expression vectors to create or correct mutant phenotypes

E. Passage and M. Fontés

SOMOGYI: Expression profiling and genetic networks

R. Somogyi, S. Fuhrman, X. Wen, P. D'haeseleer*, S. Liang, and J.F. Loring

ZHOU: Gene expression profiling in molecular pharmacology

Y. Zhou, U. Scherf, M. Waltham, W.C. Reinhold, L.H. Smith, J.K. Lee, D.A. Scudiero, E.A. Sausville, D. Ross, M. Eisen, D. Botstein, P.O. Brown, L. Miller, E. Liu and J.N. Weinstein

HOWELL: Annotation of the human X chromosome sequence

Gareth R. Howell, Alison J. Coffey, Susan Rhodes, Robert A. Brooksbank, Shirin S. Joseph, Jackie M. Bye, Andrew King, Laurens Wilming, David R. Bentley and Mark T. Ross

SOARES: Development of non-redundant arrays of full-length cDNAs

Maria F. Bonaldo, Brian Berger, Todd Scheetz^{1, 2}, Kyle Munn, Chad Roberts, Kang Liu, Thomas Casavant and Marcelo Bento Soares^{1, 3}

WERNER: Promoter prediction in large genomic sequences: compromise between sensitivity and specificity

Scherf, M., Klingenhoff, A., and Werner, T.

HESKETH: Perinuclear mRNA localisation by 3'untranslated sequences

John Hesketh, Marilyne Levadoux, Gillian Dalgleish, John Beattie, Heather Wallace, and Jean-Marie Blanchard

MORSE: Substrate specificity of adenosine deaminases that act on RNA (ADARs) in C. elegans

Daniel P. Morse, Leath A. Tonkin, P. Joe Aruscavage, and Brenda L. Bass

BODE: Scaffold/matrix attached regions (S/MAR Elements): Detection and activities in vivo

Jürgen Bode, Alexandra Baer, Angela Knopp, Dirk Schübeler, Jost Seibler, Craig Benham Armin Baiker , and Hans-Joachim Lipps

GOJOBORI: A gene expression profile obtained by determining over 1000 cDNA clones from a single Planarian eye cell

Takashi Gojobori, Kazuho Ikeo, Silvana Gaudieri, Akira Tazaki, Masumi Nakazawa, Masafumi Shimoda, Yuzuru Tanaka, and Kiyokazu Agata

SVERDLOV: Towards the understanding of the possible impact of human endogenous retroviruses on evolutionary changes in genome transcription

Eugene D. Sverdlov

PESOLE: Structural and evolutionary analysis of eukaryotic mRNA untranslated regions

Pesole G.^1,4, Liuni S.^2,4, Larizza A., Makalowski W.⁵ and Saccone C.^3,4

SIMONNEAU: Analysis of new transcribed sequences possibly involved in same functional pathways of neuronal development and identified by differential display

Michel Simonneau, Christophe Mas, Francine Bourgeois, and Fabien Guimiot

WINGENDER: TRANSFAC: an integrated system for gene expression regulation

E. Wingender, X. Chen, H. Karas, A. Kel, I. Liebich, V. Matys, T. Meinhardt, M. Pruess, I. Reuter, and F. Schacherer

LIN: Identification and characterization of tissue-specific genes using transgenic zebrafish

Shuo Lin

EBERWINE: Molecular biology of single cells: Insights into human disease

Jim Eberwine

WIEMANN: Sequencing and analysis of full length cDNAs in the course of the German Genome Project

Stefan Wiemann, Wilhelm Ansorge, Helmut Blöcker, Helmut Blum, Andreas Düsterhöft, Karl Köhrer, Werner Mewes, Brigitte Obermaier, Rolf Wambutt, and Annemarie Poustka

VON MELCHNER: Disruption of a gene induced in early mouse development results in severe emphysema and Adenocarcinoma

Irmgard S. Thorey, Anja Sterner-Kock, Jürgen Otte, and Harald von Melchner

BRAZMA: Mining the yeast genome expression and sequence data

Alvis Brazma

WEISSMAN: Transcript profiling of hematopoietic cell development and activation

Yamaga, S., Yeramilli, S.⁵, Lian, Z., Prashar, Y.⁵, Lee, H., Berliner, N., Liu, Y-C., Goguen, J., Newburger, P., and Weissman, S.

BARBAZUK: Construction of a whole genome transcribed sequence map for the zebrafish Danio Rerio

W. Brad Barbazuk, Ian Korf, Frank Li, John McPherson and Steve Johnson

HICKS: Development of an embryonic stem cell library of defined mutations

Geoffrey G. Hicks

WORLEY: Search services to improve the identification of expressed sequences and their functions

J. Bouck, M. McLeod, T. McNeill, G. Weinstock^1,3, R. A. Gibbs, and K. C. Worley

FICKETT: Finding gene boundaries on large contigs

James Fickett

JENNINGS: Dissecting transcriptional circuitry and mechanisms in yeast

Ezra Jennings

WELSH: The RAP-array approach to cDNA array hybridization

John Welsh

MURAL: Extracting meaningful information from draft sequence

R. J. Mural, F. W. Larimer, M. B. Shah and E. C. Uberbacher

PAN: Approaches towards global profiling of cDNA mutations

Pan, X. and Weissman, S.

NELSON: Functional dissection of the RANTES promoter: Insights into mechanisms of tissue specific regulation of transcription

Peter J. Nelson, Sabine Böhlk, Sabine Fessele and Thomas Werner

BORSANI: A tale of two diseases

Giuseppe Borsani

ARONOW: Stepwise chromatin restructuring and unexpected rules for interaction of distributed cis-elements that form a locus control region in vivo

Catherine Ley-Ebert, Carolyn Florio, John Maier, Chris Cost and Bruce Aronow

OVERTON: (ABSTRACT NOT AVAILABLE)

All speaker abstracts

Posters

DE BEKKE: Experimental approach towards identification of small non-messenger RNAs in the genome of Caenorhabditis elegans

Anja op de Bekke, Alexander Huttenhofer, Martin Kiefmann, John O'Brien,  Hans Lehrach and Jurgen Brosius

HEUERMANN: Stable expression of epitope-tagged proteins in mammalian cells

Kenneth E. Heuermann and Bill L. Brizzard

KAMP: Structure and function of the spermatogenesis genes located in AZFa, a region of the human Y chromosome deleted in men with complete germ cell aplasia

Kamp, Christine, Kirsch, S, Hirschmann, P, Ditton, HJ, Brede, G, Tyler-Smith, C, Rappold, GA, and Vogt, PH

BULL: Analysis of gene expression data generated by oligonucleotide fingerprinting

Christof Bull, John O'Brien, Uwe Radelof, Ralf Herwig, Steffen Hennig, Axel Nagel and Hans Lehrach

SLAVOV: Analysis of novel genes from human chromosome 21: determination and characterization of complete protein sequences and examples of overlapping genes

Dobromir Slavov, Roger Lucas, Andrew Fortna and Katheleen Gardiner

SPENGLER: ASDB: Novel database of alternatively spliced genes

I. Dubchak,  M. S. Gelfand, I. Dralyuk, M. Zorn, S. Spengler

KIKUNO: Functional and molecular evolutional analysis of predicted gene products of human long cDNAs

Reiko Kikuno, Takahiro Nagase, Ken-Ichi Ishikawa, Mikita Suyama, Mina Waki, Makoto Hirosawa, Nobuo Nomura, and Osamu Ohara

BORISSEVITCH: Large scale cloning, sequencing and expression profiling of genes expressed in transcription factor CREM dependant manner during mouse spermatogenesis

Igor Borissevitch, Tim Beissbardth, Andreas Hoerlein and Guenter Schuetz

MONTPETIT: Genomic comparative analysis of the Fugu rubripes homologue of ETV6, a gene frequently rearranged in human leukemias

Alexandre Montpetit and Daniel Sinnett

CLIFTON: Comparison of completed genomes to sample sequences of related genomes

Sandra W. Clifton, Michael McClelland, Webb Miller, William R. Pearson, Aaron J. Mackey, and Richard K. Wilson

SCHMIDT-KITTLER: Genomic characterisation of early disseminated tumor cells isolated from bone marrow of breast cancer patients

Oleg Schmidt-Kittler, Julian Schardt, Günter Schlimok, Gert Riethmüller and Christoph Klein

ROTTIERS: Oxidative metabolism and gene expression: Gene discovery array analysis

Pieter Rottiers, Vera Goossens and Johan Grooten

RUUSKANEN: Divergent 2-adrenoceptor subtypes in the zebrafish (Danio rerio)

Jori Ruuskanen, Minna Varis, Erik Salaneck, Tiina Salminen, Tommi Nyronen, Mark S. Johnson, Dan Larhammar and Mika Scheinin

TEMPLE: GATEWAY cloning: A high-throughput gene transfer technology for rapid functional analysis and protein expression

James Hartley, Gary Temple, Michael Brasch, et al.

KAPANADZE: Sequence homology between human and mouse genomic regions to identify the tumor suppressor gene involved in B cell chronic lymphocytic leukemia

Bagrat Kapanadze, Nataliy Makeeva, Olle Sangfelt, Martin Corcoran, Anna Baranova, Eugene Zabarovsky, Nick Yankovsky, Dan Grander and Stefan Einhorn

CLARK: Comparative mapping in the Japanese pufferfish (Fugu rubripes)

Clark, M. S; Edwards, Y.J.K; Shaw, L; Snell, P.; Smith, S; and Elgar, G.

FROLOVA: Transcriptional regulation of the collagen a1(IX) gene during eye development

Elena I. Frolova and David C. Beebe

KREFT: Identification of a novel cellular protein that binds to the HBV RNA pregenome

S. Kreft and M. Nassal

All poster abstracts

Return to Genome-Related Meetings and Reports