DOE Human Genome Program    
Contractor-Grantee Workshop VII   
January 12-16, 1999  Oakland, CA

A

• Adams, Mark D. 
• 4. Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2
• 66. Human BAC End Sequencing
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Adams, Michael W.
• 150. Archael Proteomics
• Adamson, Anne E. 
• 191. Human Genome Management Information System:  Making Genome Project Science and Implications Accessible
• Afzal, Veena
• 134. YAC-ES (Y-ES) Cell Libraries for In Vivo Analysis of JGI Sequences
• Agron, Peter 
• 50. Use of Suppressive Subtractive Hybridization to Identify Genomic Differences among Enteropathogenic Strains of Yersinia enterocolitica and Yersinia pseudotuberculosis
• Alarie, Jean-Pierre
• 20. Development of a Multilabel DNA Mapping Technique Using SERS Gene Probes
• Albertson, Donna
• 101. Arraydb:  CGH-Array Tracking Database
• Allman, S.L. 
• 45. Laser Desorption Mass Spectrometry for DNA Sequencing and Analysis 
• Anantharaman, T. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Andersen, Gary
• 50. Use of Suppressive Subtractive Hybridization to Identify Genomic Differences among Enteropathogenic Strains of Yersinia enterocolitica and Yersinia pseudotuberculosis
• Anderson, D. 
• 80. Screening for Large-Scale Variations in Human Genome Structure
• Anderson, Gordon A.
• 149. Rapid and Sensitive Characterization of Proteomes:  an Adjunct to the Genome
• Andriese, Timothy
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6. A Comparison of Sequence Gap Closure Strategies
• Apodaca, J
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Aravind, L.
110. Genomics and Engineering of a Radioresistant Bacterium
• Arco, David
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes
• Arellano, Andre
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6. A Comparison of Sequence Gap Closure Strategies
• 9. Automation of Finishing at JGI-LLNL
• Arzberger, Peter
• 78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank
• Asbury, Chip
• 49. Manipulation of Single DNA Molecules by Induced-Dipole Forces in Micro-Fabricated Structures
• Ashby, Matthew N.
• 121. The Regulatory Network of a Eukaryote
• Ashworth, Linda K.
• 74. Completing the Sequence-Ready Map of Chromosome 19
• 85. DOE Joint Genome Institute Public WWW Site
• 133. Differential Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome 19q13.2 and Mouse Chromosome 7
• Aston, C.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Atkins, John
• 104. Computer Analysis of DNA Sequence Data to Locate SECIS Elements
• 146. One Gene - How Many Proteins?
• Attix, Tina
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Avila, Julie
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Ayers, M.
• 160. Microbial Genome Sequencing and Comparative Analysis

B

• Badger, J. H. 
• 161. Genome Sequencing and Analysis
• Badri, Hummy
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries
• 74. Completing the Sequence-Ready Map of Chromosome 19
• Bailey, S.
• 69. One Tier Pooling of a Total Genomic BAC Library
• Bakis, Michele
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5
• Barber, Jack R.
• 143. Ribozyme Gene Delivery for Gene Target Discovery and Functional Validation
• Barns, Susan M.
• 164. Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments
• Barrett, Christian
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Bashirzadeh, R.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Beaton, Amy
• 141. Resources for Functional Genomics in Drosophila
• Beattie, Kenneth L. 
• 52. Development of Flowthrough Genosensor Chips
• Ben-Asher, E.
• 14. Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS)
• Benn, James
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• Benner, W. Henry
• 53a. Mass Spectrometry for Analyzing and Sorting DNA Ions
• Bentley, David R.
• 62. A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• Berkovitz, John
• 25. Prep Track I - A Dynamic  Approach to Liquid Handing Robotics
• 26. Prep Track II Design:  Lessons Learned from PrepTrack I
• Berger, Brian 
• 123. Development and Application of Subtractive Hybridization-Based Approaches to Facilitate Gene Discovery
• Berggren, Travis
• 47. Analyzing Genetic Variations by Mass Spectrometry
• Bergmann, Anne
• 132. Comparative Analysis of Structure and Function in an Imprinted Region of Proximal Mouse Chromosome 7 and the Related Region of Human Chromosome 19q13.4
• Bergstrom, Rebecca
• 129. Using Overlapping Deletions in the Analysis of Recessive Phenotypes
• Berman, Helen M.
• 78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank
• Berry, Marla
• 104. Computer Analysis of DNA Sequence Data to Locate SECIS Elements
• Best, A.A.
• 161. Genome Sequencing and Analysis
• Birren, B.
• 57. Molecular Cytogenetics Comes of Age:  A Resource that Extends From "T" to Shining "T"
• Blackwell, Thomas W.
• 112. Probabilistic Physical Map Assembly
• Blanchard, Alan
• 20a. Construction of a Genome-Wide, Highly Characterized Clone Resource for Genome Sequencing
• Block, S.
• 193. The JASON Study of the Human Genome Project
• Bobo, Tory
• 88. Informatics for Production Sequencing at LLNL
• Bochner, H.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Bocskai, Diana
• 4. Physical Mapping and sequencing of Human Chromosome 16p12.1-11.2
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Boivin, M. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Bonaldo, Maria de Fatima
• 123. Development and Application of Subtractive Hybridization-Based Approaches to Facilitate Gene Discovery
• Booker, M.
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Bouck, John 
• 13. Concatenation cDNA Sequencing and Analysis of 500 Human Brian cDNA Clones
• Boughton, Ann
• 187. Getting the Word Out on the Human Genome Project:  A Course for Physicians
• Boulton, Jeremy 
• 98. Mapping Data
• Bourne, Phil
• 78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank
• Bowman, Cheryl
• 158. The Chlorobium tepidum Genome Sequencing Program at TIGR
• Bradbury, Andrew
• 145. Using Phage Display in Functional Genomics
• Branscomb, Elbert 
• 133. Differential Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome 19q13.2 and Mouse Chromosome 7
• Breton, G.
160. Microbial Genome Sequencing and Comparative Analysis
• Brim, Hassan 
• 152. Genomics and Engineering of a Radioresistant Bacterium
• Brion, Catherine M.
• 137. Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• Bristow, James
• 139. Gene Expression in Cardiac Hypertrophy as Measured by cDNA Microarrays
• Brokstein, Peter 
• 141. Resources for Functional Genomics in Drosophila
• Bronson, Scott
• 173. The Science and Issues of Human DNA Polymorphisms
• Brooks, Todd
• 28. Technology Development for the Human Genome Project
• Bross, S. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Brow, Mary Ann D.
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes
• Brower, Amy M.
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 87. Verification of Finished Sequence at JGI-LLNL
• Brown, Michael P.S.
• 119. Ribosomal RNA Alignment Using Stochastic Context Free Grammars
• Brown, Nancy C.
• 8. Process Description of a 5 Mb/Year Finish Sequencing Operation nUsing 100% Plasmid Double End Sequencing
• Brownstein, B.
• 111. Screening for Large-Scale Variations in Human Genome Structure
• Bruce, David. C. 
• 2. Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 8. Process Description of a 5 Mb/Year Finish Sequencing Operation nUsing 100% Plasmid Double End Sequencing
• 69. One Tier Pooling of a Total Genomic BAC Library
• Bruce, James E.
• 44. DNA Characterization by Electrospray Ionization-Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
• 149. Rapid and Sensitive Characterization of Proteomes; an Adjunct to the Genome
• Bruce, Robert
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• Brunk, Brian
• 125. The DOTS Resource for Gene Expression Analysis and Genome Annotation
• Bryant, Jennifer
• 8. Process Description of a 5 Mb / Year Finish Sequencing Operation Using 100% Plasmid Double End Sequencing
• Buchanan, M.V.
• 46. PCR Product Size Measurement using MALDI Mass Spectrometry
• Buckingham, J.M.
• 2. Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 11. LANL Finishing Team Accomplishments in FY98
• Bulyk, Martha
• 135. Comparative Functional Genomics
• Bunde, Terry
• 20. Development of a Multilabel DNA Mapping Technique Using SERS Gene Probes
• Burkhart-Schultz, Karolyn J.
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6. A Comparison of Sequence Gap Closure Strategies
• 9. Automation of Finishing at JGI-LLNL
• 87. Verification of Finished Sequence at JGI-LLNL
• Burtis, Kenneth C.
• 142. Isolation of  Drosophila DNA Repair Genes
• Bussod, M.
• 10. Sequence Validation and Quality Assessment at the Joint Genome Institute
• Butler-Loffredo, Laura-Li
• 21. Vectors for Using Nested Deletions to Sequence Either Strand of Cloned DNA

C

• Cai, Hong 
• 43. High Throughput SNP Discovery and Scoring Using Bead-Based Flow Cytometry
• 48. DNA Sequencing by Single Molecule Detection
• Cai, Yuping 
• 36. DNA Sequencing Using Capillary Array Electrophoresis
• Caldwell, Greg P.
• 62. A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• Campbell, Connie
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Campbell, M.
• 69. One Tier Pooling of a Total Genomic BAC Library
• Cao, Yicheng
• 4. Physical Mapping and sequencing of Human Chromosome 16p12.1-11.2
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• 98. Mapping Data
• Carninci, P.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Caron, A.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Carpenter, D.A.
• 131. Mouse Genetics and Mutagenesis for Functional Genomics:  The Chromosome 7 and 15 Mutagenesis Programs at the Oak Ridge National Laboratory
• Carrano, Anthony V.
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6. A Comparison of Sequence Gap Closure Strategies
• 7. The SaF Finishing Tools
• 9. Automation of Finishing at JGI-LLNL
• 88. Informatics for Production Sequencing at LLNL
• Cartwright, Peter
• 89. A Workflow-Based LIMS for High-Throughput Sequencing, Genotyping, and Genetic Diagnostic Environments
• 90. A Simulation Extension of a Workflow-Based LIMS
• Caruso, A.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Casey, Denise K.
• 191. Human Genome Management Information System:  Making Genome Project Science and Implications Accessible
• Catanese, Joseph J.
• 62. A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• 64. "RPCI" Human and Mouse Bacterial Artificial Chromosome Libraries:  Construction and Characterization
• Cawley, Simon
• 94. Probabilistic Basecalling
• Cepeda, Mario
• 26. Prep Track II Design:  Lessons Learned from PrepTrack I
• Chao, Hanna
• 129. Using Overlapping Deletions in the Analysis of Recessive Phenotypes
• Chasteen, L.A.
• 2. Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 8. Process Description of a 5 Mb/Year Finish Sequencing Operation nUsing 100% Plasmid Double End Sequencing
• Chen, C.H. Winston
• 45. Laser Desorption Mass Spectrometry for DNA Sequencing and Analysis
• Chen, Wang Q.
• 75. High-throughput Multiplexed Fluorescent-Labeled Fingerprinting of BAC Clones
• Chen, X.N. 
• 57. Molecular Cytogenetics Comes of Age:  A Resource that Extends From "T" to Shining "T"
• Chen, Yu-Jiun
• 68. A New Bacterial Artificial Chromosome (BAC) Vector, a Large-Insert (Average of Over 200 kb) BAC Library of the Human, and an Improved Method of Construction of BAC Libraries
• 75. High-throughput Multiplexed Fluorescent-Labeled Fingerprinting of BAC Clones
• Cheng, Jan-Fang 
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5
• 97. Java Based Restriction Map Display
• 134. YAC-ES (Y-ES) Cell Libraries for In Vivo Analysis of JGI Sequences
• 136. A Targeted 450 Kb Deletion in Mouse Chromosome 11 Identifies a Novel Gene Dramatically Impacting on VLDL Triglyceride Production
• 137. Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• 138. Discovering the Genes Affected by Schizophrenia Using DNA Micro-Array
• Cherry, Joshua 
• 157. The Genome Sequence of a Hypertherophilic Archaeon:  Pyrococcus furiosus
• Cheung, Alex
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL
• Chi, Han-Chang 
• 5. Human Telomere Mapping and Sequencing
• Choe, Juno
• 61. Insert Clone Selection by Sorting GFP-Expressing  E. coli
• Choi, Sangdun
• 68. A New Bacterial Artificial Chromosome (BAC) Vector, a Large-Insert (Average of Over 200 kb) BAC Library of the Human, and an Improved Method of Construction of BAC Libraries
• Chrisler, William B.
• 153. Functional Analysis of Deinococcus radiodurans Genomes by Targeted Mutagenesis
• Christensen, Mari
• 74. Completing the Sequence-Ready Map of Chromosome 19
• Christensen, Matthew
• 173. The Science and Issues of Human DNA Polymorphisms
• Chu, Lung-Yung 
• 91. A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• Church, George M. 
• 135. Comparative Functional Genomics
• Clarizia, Anthony
• 174. Medical Confidentiality in the Market Driven Managed Care Setting:  Does the Law Protect Against Misuse of DNA-Based Tests?
• Clark, Lynn
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Clark, Steve
• 101. Arraydb:  CGH-Array Tracking Database
• Clarke, V.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Clayton, Rebecca A.
• 151. Microbial Genome Sequencing and Analysis at TIGR
• 155. Complete Genome Sequencing of Shewanella putrefaciens
• 163. Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways
• 168. Insights into Evolution from the Thermotoga maritima Genome
• Coefield, Jackie
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• Cole, James R.
• 120. Ribosomal Database Project II
• Collins, Colin
• 72. An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• Collins, Debra L. 
• 180. Human Genome Teacher Networking Project
• Colón, González, G.M.
• 161. Genome Sequencing and Analysis
• Colyaco, Rick
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• Conroy, Jeffrey
• 62. A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• Conzevoy, Elizabeth
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Cook, R.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Cooper, Phil
• 140. Genetic Factors Affecting Globin Switching
• Cornell, Earl W.
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL
• Cornwall, J. 
• 193. The JASON Study of the Human Genome Project
• Corsetti, Lisa
• 86. JGI Informatics and the PSF Network
• 88. Informatics for Production Sequencing at LLNL
• Cotton, Matthew D.
• 158. The Chlorobium tepidum Genome Sequencing Program at TIGR
• Crabtree, Jonathan
• 125. The DOTS Resource for Gene Expression Analysis and Genome Annotation
• Crane, Travis
• 28. Technology Development for the Human Genome Project
• Craven, M. Brook
• 158. The Chlorobium tepidum Genome Sequencing Program at TIGR
• Cretu, Gabriela
• 137. Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• Culpepper, Pamela A.
• 102. BCM Search Launcher --Analysis of the Genome Sequence
 

---

D

• D'Souza, Mark
• 165. WIT System:  Advantages of Parallel Analysis of Multiple Genomes
• Daggett, P.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Daly, Michael J.
• 152. Genomics and Engineering of a Radioresistant Bacterium
• Danganan, Linda 
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Davidson, Jeff Alan 
• 179. Your World/Our World --Exploring the Human Genome
• Davis, Jody A.
• 164. Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments
• Davis, Ronald W.
• 24. Automation for High Throughput Genomic DNA Sequencing
• Davy, Donn
• 78. The Genome Annotation Collaboration:  An Overview
• 101. Arraydb:  CGH-Array Tracking Database
• de Arruda, Monika 
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genome DNA by Invasive Cleavage of Oligonucleotide Probes
• de Jong, Pieter J. 
• 63. Preparation of New BAC Vectors for BAC Cloning and Transformation-Associated Recombination ("TAR") Cloning
• 64. "RPCI" Human and Mouse Bacterial Artificial Chromosome Libraries:  Construction and Characterization
• Deaven, L.L.
• 2. Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 8. Process Description of a 5 Mb/Year Finish Sequencing Operation nUsing 100% Plasmid Double End Sequencing
• 69. One Tier Pooling of a Total Genomic BAC Library
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Delobette, S.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Demirjian, David 
• Profile Search
• Devine, Maura M.
• 18. PCR Using Branched Modular Primers
• Dho, So Hee
• 4. Physical Mapping and sequencing of Human Chromosome 16p12.1-11.2
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Dias, Jennifer
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• Diekhans, Mark
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Diemer, Karen L.
• 159. Searching for Synteny:  A Whole-Genome Comparison of Caenorhabditis elegans with Saccharomyces cerevisiae
• Dillingham, Clay
• 184. Hispanic Role Model and Science Education Outreach Project: Human Genome Project Education and Outreach Component
• Dimilanta, E.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Ding, Yan
• 75. High-Throughput Multiplexed Fluorescent-Labeled Fingerprinting of BAC Clones
• Do, Long
• 1. Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6. A Comparison of Sequence Gap Closure Strategies
• 9. Automation of Finishing at JGI-LLNL
• Doggett, Norman A.
• 2. Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 4. Physical Mapping and sequencing of Human Chromosome 16p12.1-11.2
• 8. Process Description of a 5 Mb/Year Finish Sequencing Operation nUsing 100% Plasmid Double End Sequencing
• 10. Sequence Validation and Quality Asseessment at the Joint Genome Institute
• 69. One Tier Pooling of a Total Genomic BAC Library
• 71. Systematic Conversion of a YAC/STS Map into a Sequence Ready BAC Map
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• 97. Java Based Restriction Map Display
• Doktycz, Mitchel J.
• 52. Development of Flowthrough Genosensor Chips 
• Doucette-Stamm, L.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Dougherty, Michael J. 
• 183. Genes, Environment, and Human Behavior
• Dralyuk, I. 
• 147. ASDB:  Database of Alternatively Spliced Genes
• Drobyshev, A.
• 53. Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Dubchak, Inna 
• 106. Protein Fold Prediction in the Context of Fine-Grained Classifications
• 118. Analysis of Ribosomal RNA Sequences by Combinatorial Clustering
• 147. ASDB:  Database of Alternatively Spliced Genes
• Dubhashi, Kedarnath A. 
• 95. The FAKtory Sequence Assembly System
• Dubois, J. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Dunbar, John D.
• 164. Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments
• Dunford-Shore, Brian
• 111. Screnning for Large-Scale Variations in Human Genome Structure
• 113. Multi-Resolution Molecular Sequence Classification
• 114. PQ Edit --A Web-Based Database Table Editor and the Relational Database Abstraction Layer
• Dunn, Diane
• 157. The Genome Sequence of a Hypertherophilic Archaeon:  Pyrococcus furiosus
• Dunn, John J. 
• 21. Vectors for Using Nested Deletions to Sequence Either Strand of Cloned DNA
• Dunn, W.C.
• 41. Integrated Microchip Devices for DNA Analysis
• Dyson, F.
• 193. The JASON Study of the Human Genome Project

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E

• Edington, J.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Egan, J.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Egenberger, Laurel 
• 182. The Community College Initiative
• Eisenberg, Rebecca S. 
• 176. Competition Between Public and Private Research Funding in Genomics
• Elkin, Chris
• 28. Technology Development for the Human Genome Project
• Ellston, D.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Ericson, M.N.
• 128. Screening for Mutant Phenotypes in Mice at ORNL
• Evenzehav, A.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Ezedi, J. 
• Microbial Genome Sequencing and Comparative Analysis

F

• Fagan, Phoebe
• 78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank
• Farmer, A.
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Fawcett, Joe
• 10. Sequence Validation and Quality Assessment at the Joint Genome Institute
• 69. One Tier Pooling of a Total Genomic BAC Library
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Fei, Zhengdong
• 47. Analyzing Genetic Variations by Mass Spectrometry
• Feldblyum, Tamara
• 151. Microbial Genome Sequencing and Analysis at TIGR
• Feng, Bingbing 
• 44. DNA Characterization by Electrospray Ionization-Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
• Fields, Robert
• 33. Fully Automated DNA Sequencing with a Commercial 96-Capillary Array Instrument
• Fisher, Greg
• 164. Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments
• Fisk, David J.
• 23. Analysis of Gradients of Polymer Concentration or Ionic Strength
• Fitz-Gibbon, Sorel 
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Flak, Tod
• 121. The Regulatory Network of a Eukaryote
• Flannery, Ray
• 84. High-Performance Computing Servers
• Fleishchmann, Robert D.
• 151. Microbial Genome Sequencing and Analysis at TIGR
• Folta, Peg 
• 86. JGI Informatics and the PSF Network
• 127. IMAGEne II:  EST Clustering and Ranking of I.M.A.G.E. cDNA Clones Corresponding to Known and Unknown Genes
• Foote, R.S. 
• 41. Integrated Microchip Devices for DNA Analysis
• 144. Microfabricated Microfluidic Devices for Proteome Mapping
• Foster, Carmen M. 
• 130. Germline Deletion Complexes in Embryonic Stem Cells for Mapping Gene Function in Mouse-Human Homology Regions
• Fotin, A.
• 53. Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Fraser, Claire M.
• 151. Microbial Genome Sequencing and Analysis at TIGR
• 154. Complete Genome Sequence of Deinococcus radiodurans
• 155. Complete Genome Sequencing of Shewanella putrefaciens
• 158. The Chlorobium tepidum Genome Sequencing Program at TIGR
• 163. Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways
• 168. Insights into Evolution from the Thermotoga maritima Genome
• Frazer, Kelly A.
• 136. A Targeted 450 Kb Deletion in Mouse Chromosome 11 Identifies a Novel Gene Dramatically Impacting on VLDL Triglyceride Production
• 137. Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• 159. Searching for Synteny:  A Whole-Genome Comparison of Caenorhabditis elegans with Saccharomyces cerevisiae
• Frengen, Eirik
• 64. "RPCI" Human and Mouse Bacterial Artificial Chromosome Libraries:  Construction and Characterization
• Fresco, Jacques R.
• 54. Third-Strand Binding Probes for Duplex DNA in Particles of Varying Size
• Friddle, Carl
• 139. Gene Expression in Cardiac Hypertrophy as Measured by cDNA Microarrays
• Frise, Erwin
• 141. Resources for Functional Genomics in Drosophila
• Furlong, J.
• 65. Characterization of a BAC Clone Resource for Human Genomic Sequencing:  Analysis of 150 Mb of Human STCs and Implications for Human Genomic Sequencing

G

• Gaidos, Eric
• 155. Complete Genome Sequencing of Shewanella putrefaciens
• Galloway, Michael
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation
• 82. Genome Channel Analysis Engine:  A System for Automated Analysis of Genome Channel Data
• Gao, Xiaolian 
• 51. A Light-Directed DNA/RNA-Microarray Synthesizer
• Garner, Harold R.
• 24. Design and Assembly of a Turnkey, High Throughput Oligonucleotide Synthesis Facility for Use on the Human Genome Project
• Garrison, Daniel E.
• 95. The FAKtory Sequence Assembly System
• Garrity, G.M.
• 120. Ribosomal Database Project II
• Gebauer, D.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Geist, Al 
• 84. High-Performance Computing Servers
• Gelfand, M.S.
• 147. ASDB:  Database of Alternatively Spliced Genes
• Genome Annotation Consortium
• 78. The Genome Annotation Collaboration:  An Overview
• 79. Visualization, Navigation, and Query of Genomes:  The Genome Channel and Beyond
• 80. Genome Annotation Data Management and Data Administration: Developing Summary Results for User Navigation, Genome Research, Improved Data Processing, and Quality Metrics
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation
• 82. Genome Channel Analysis Engine:  A System for Automated Analysis of Genome Channel Data
• 83. GRAIL-EXP:  Multiple Gene Modeling Using Pattern Recognition and Homology
• 84. High-Performance Computing Servers
• George, Glen
• 98. Mapping Data
• Georgescu, Anca
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries
• 74. Completing the Sequence-Ready Map of Chromosome 19
• Gesteland, Raymond F.
• 104. Computer Analysis of DNA Sequence Data to Locate SECIS Elements
• 146. One Gene - How Many Proteins?
• Ghochikyan, A.
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS)
• Giacalone, J.
• 55.  Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Gibaja, V. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Gibbs, Richard A.
• 13. Concatenation cDNA Sequencing and Analysis of 500 Human Brain cDNA Clones
• Gibson, R.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Giddings, Michael C.
• 100. A Distributed Object System for Automated Processing and Tracking of Fluorescence Based DNA Sequence Data
• Giddings, Michael 
• 104.  Computer Analysis of DNA Sequence Data to Locate SECIS Elements
• 146. One Gene - How Many Proteins?
• Gilbert, K. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Gilliland, Gary
• 78a. Our Vision for a New Macromolecular Structure Database --The New Protein Databank
• Giometti, Carol S.
• 150. Archael Proteomics
• Glazer, Alexander N. 
• 19.  Synthesis, Characterization, and Potential Applications of Biotinylated Energy Transfer Oligonucleotides
• 36.  DNA Sequencing Using Capillary Array Electrophoresis
• 40.  Integrated Electrochemical Detection with Microfabricated Capillary Electrophoresis Chips
• Glover, Lisa
• 162. Use of Suppressive Subtractive Hybridization to Identify Genomic Differences among Enteropathogenic Strains of Yersinia enterocolitica and Yersinia pseudotuberculosis
• Glusman, G. 
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS)
• Golovlev, V.V.
• 45.  Laser Desorption Mass Spectrometry for DNA Sequencing and Analysis
• Gong, Elaine
• 136. A Targeted 450 Kb Deletion in Mouse Chromosome 11 Identifies a Novel Gene Dramatically Impacting on VLDL Triglyceride Production
• Goodwin, L.A.
• 2.  Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 11.  LANL Finishing Team Accomplishments in FY98
• Goodwin, Peter M.
• 48.  DNA Sequencing by Single Molecule Detection
• Gordon, Laurie A.
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 74. Completing the Sequence-Ready Map of Chromosome 19
• 97. Java Based Restriction Map Display
• 133. Differential Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome 19q13.2 and Mouse Chromosome 7
• Gorrell, James H.
• 13. Concatenation cDNA Sequencing and Anlalysis of 500 Human Brain cDNA Clones
• Goss, K.C.
• 128. Screening for Mutant Phenotypes in Mice at ORNL
• Grady, Deborah L. 
• 5. Human Telomere Mapping and Sequencing
• Graham, D.E.
• 161. Genome Sequencing and Analysis
• Grajewski, Wally
• 91.  A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• Gray, B. 
• 25. Prep Track I - A Dynamic Approach to Liquid Handling Robotics
• 26. PrepTrack II Design: Lessons Learned from PrepTrack I
• Gray, Joe 
• 101. Arraydb:  CGH-Array Tracking Database
• Greely, Henry T.
• 188. Individualizing Medicine Through Genomics:  Medical and Social Implications
• Griffin, Guy D.
• 20.  Development of a Multilabel DNA Mapping Technique Using SERS Gene Probes 
• Griffin, Tim
• 47. Analyzing Genetic Variations by Mass Spectrometry
• Groza, Matthew 
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries
• 74. Completing the Sequence-Ready Map of Chromosome 19
• Gu, Lisa
• 110. Improved Specificity and Sensitivity in Sequence Similarity Search Through the Use of Suboptimal Alignment Based Score Filtering 
• Guerin, J.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Gulari, Erdogan
• 51.  A Light-Directed DNA/RNA- Microarray Synthesizer 
• Gulari, Ning
• 51.  A Light-Directed DNA/RNA- Microarray Synthesizer 
• Gurvich, Olga
• 104. Computer Analysis of DNA Sequence Data to Locate SECIS Elements

H

• Haab, Brian B. 
• 37. Focused Single Molecule DNA Detection in Microfabricated Capillary Electrophoresis Chips
• Hall, Jeff G.
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes
• Hammond, Sha 
• 74. Completing the Sequence-Ready Map of Chromosome 19
• Han, Cliff 
• 71. Systematic Conversion of a YAC/STS Map into a Sequence Ready BAC Map
• 77. High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Handelin, Barbara 
• 178. The Responsibility of Oversight in Genetics Research:  How to Enable Effective Human Subjects Review of Public and Privately Funded Research Programs
• Haney, P.J. 
• 161. Genome Sequencing and Analysis
• Harger, C.A.
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Harpold, M.M.
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Harris, Nomi
• 92. Data Visualization for Distributed Bioinformatics
• Harrison, D.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Harvey, Damon 
• 141. Resources for Functional Genomics in Drosophila 
• Hasan, Ahmad
• 22. Direct Conversion of PCR Products into Bidirectional Sequencing Fragments
• Hauser, Loren
• 133. Differential Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome 19q13.2 and Mouse Chromosome 7
• Haussler, David 
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Hawkins, Trevor. L.
• 28.  Technology Development for the Human Genome Project
• Hawley, R. Scott
• 142. Isolation of Drosophila DNA Repair Genes
• Hayashizaki, Yoshihide
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• 64.  "RPCI" Human and Mouse Bacterial Artificial Chromosome Libraries:  Construction and Characterization
• He, Kaizhang
• 22. Direct Conversion of PCR Products into Bidirectional Sequencing Fragments
• Heidelberg, John
• 154. Complete Genome Sequencing of Deinococcus radiodurans
• 155. Complete Genome Sequencing of Shewanella putrefaciens
• Helt, Gregg
• 92. Data Visualization for Distributed Bioinformatics
• Hide, Winston A.
• 148. Predictions of Protein Structural Domains
• Hiort, C.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Hitti, J. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Ho, T. 
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Holden, James F. 
• 150. Archael Proteomics
• Holmes, Linda
• 190. DOE Alexander Hollaender Distinguished Postdoctoral Fellowships
• Holtham, K. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Hong, Ling
• 141. Resources for Functional Genomics in Drosophila 
• Hood, Leroy 
• 3. Sequencing Human Chromosome 14 and the Mouse Major Histocompatibility Locus:  A Progress Report
• 20a. Construction of a Genome-Wide, Highly Characterized Clone Resource for Genome Sequencing
• 65.  Characterization of a BAC Clone Resource for Human Genomic Sequencing:  Analysis of 150 Mb of Human STCs and Implications for Human Genomic Sequencing
• 186.  The High School Human Genome Program
• Hosseini, Roya 
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5
• Hott, C. 
• 111.  Screening for Large-Scale Variations in Human Genome Structure
• Hovhanissyan, H. 
• 14. Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extensions wiith Nucleotide Subsets (DENS)
• Howard, Mike 
• 146. One Gene - How Many Proteins?
• Hoyt, Peter R.
• 56. Verifying Sequence By Atomic Force Microscopy
• HTSC Staff 
• 65.  Characterization of a BAC Clone Resource for Human Genomic Sequencing:  Analysis of 150 Mb of Human STCs and Implications for Human Genomic Sequencing
• Huang, W. 
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Hudson, T. 
• 57. Molecular Cytogenetics Comes of Age:  A Resource that Extends From "T" to Shining "T"
• Huff, E. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Hughes, Jason
• 135. Comparative Functional Genomics
• Hughey, Richard 
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Huh, Jun-Ryul 
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Huh, Sung Ha 
• 98. Mapping Data
• Humphries, D. 
• 25. Prep Track I - A Dynamic Approach to Liquid Handling Robotics
• 26. PrepTrack II Design: Lessons Learned from PrepTrack I
• Hunsicker, P.R. 
• 131. Mouse Genetics and Mutagenesis for Functional Genomics:  The Chromosome 7 and 15 Mutagenesis Programs at the Oak Ridge National Laboratory
• Hurst, G.B. 
• 46. PCR Product Size Measurement using MALDI Mass Spectrometry
• Hyatt, Doug 
• 79. Visualization, Navigation, and Query of Genomes:  The Genome Channel and Beyond
• 82. Genome Channel Analysis Engine:  A System for Automated Analysis of Genome Channel Data
• 83. GRAIL-EXP:  Multiple Gene Modeling Using Pattern Recognition and Homology
• 84. High-Performance Computing Servers

I

• Inman, J. 
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Ishikawa, Ken-ichi
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Isola, N.R.
• 45.  Laser Desorption Mass Spectrometry for DNA Sequencing and Analysis 
• Ito, M.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Izawa, M.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)

---

J

• Jaakkola, Tommi
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Jacobson, S.C.
• 41. Integrated Microchip Devices for DNA Analysis
• Jaklevic, Joseph M.
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL
• 53a. Mass Spectrometry for Analyzing and Sorting DNA Ions
• Jefferson, Margaret C.
• 185.  The Hispanic Educational Genome Project
• Jensen, Pamela K. 
• 149.  Rapid and Sensitive Characterization of Proteomes; an Adjunct to the Genome
• Jett, James H. 
• 48. DNA Sequencing by Single Molecule Detection
• Jewett, Phil
• 69.  One Tier Pooling of a Total Genomic BAC Library
• 77.  High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Jin, Jian 
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL 
• Jing, J. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Johnson III, Marion D. 
• 54.  Third-Strand Binding Probes for Duplex DNA in Particles of Varying Size
• Johnson, D.K. 
• 128. Screening for Mutant Phenotypes in Mice at ORNL
• 131. Mouse Genetics and Mutagenesis for Functional Genomics:  The Chromosome 7 and 15 Mutagenesis Programs at the Oak Ridge National Laboratory 
• Johnson, Martin D. 
• 75.  High-Throughput Multiplexed Fluorescent-Labeled Fingerprinting of BAC Clones
• Jones, Arthur
• 101. Arraydb:  CGH-Array Tracking Database 
• Jones, M.D. 
• 2.  Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 8.  Process Description of a 5 Mb / Year Finish Sequencing Operation Using 100% Plasmid Double End Sequencing
• Jong, Miek 
• 136. A Targeted 450 Kb Deletion in Mouse Chromosome 11 Identifies a Novel Gene Dramatically Impacting on VLDL Triglyceride Production 
• Joseph, P. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Joyce, Gerry 
• 193.  The JASON Study of the Human Genome Project
• Jurka, Jerzy
• 122. Genomic Hot Spots for Homologous Recombination

K

• Kaine, B.P. 
• 161. Genome Sequencing and Analysis
• Kalush, Francis 
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Kan, Zhengyan 
• 113.  Multi-Resolution Molecular Sequence Classification 
• Kane, Thomas E. 
• 33.  Fully Automated DNA Sequencing with a Commercial 96-Capillary Array Instrument
• Kang, Hyung Lyun 
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2 
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• Karger, Barry L.
• 35.  Long-Read DNA Sequencing by Capillary Array Electrophoresis
• 110a. Expert System for Long-Read Base-Calling in DNA Sequencing by Capillary Electrophoresis
• Karplus, Kevin
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods
• Katoh, Motonobu 
• 60.  Direct Isolation of a Centromeric Region from a Human Mini-Chromosome by in Vivo Recombination in Yeast
• Katz, Susan
• 178. The Responsibility of Oversight in Genetics Research:  How to Enable Effective Human Subjects Review of Public and Privately Funded Research Programs
• Kawahire, S.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Kawai, J.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Keagle, P. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Kee, Susan E. 
• 177.  Microbial Literacy Collaborative:  Intimate Strangers:  Unseen Life on Earth
• Kegelmeyer, Laura 
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries 
• Keller, A.
• 65.  Characterization of a BAC Clone Resource for Human Genomic Sequencing:  Analysis of 150 Mb of Human STCs and Implications for Human Genomic Sequencing
• Keller, Richard A. 
• 48. DNA Sequencing by Single Molecule Detection 
• Kernan, John 
• 33.  Fully Automated DNA Sequencing with a Commercial 96-Capillary Array Instrument 
• Ketchum, Karen A. 
• 158.  The Chlorobium tepidum Genome Sequencing Program at TIGR
• Khandurina, J.
• 41. Integrated Microchip Devices for DNA Analysis 
• Kheterpal, Indu 
• 36.  DNA Sequencing Using Capillary Array Electrophoresis
• 39.  Integrated Sequencing Sample Preparation on CE Microplates
• Khomyakova, E.
• 53.  Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Khrebtukova, Irina 
• 130. Germline Deletion Complexes in Embryonic Stem Cells for Mapping Gene Function in Mouse-Human Homology Regions
• Kikuno, Reiko
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Kim, Joomyeong 
• 132.  Comparative Analysis of Structure and Function in an Imprinted Region of Proximal Mouse Chromosome 7 and the Related Region of Human Chromosome 19q13.4
• Kim, Ung-Jin 
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2 
• 20.  Development of a Multilabel DNA Mapping Technique Using SERS Gene Probes
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource
• 72.  An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2
• 98. Mapping Data
• 99. A Relational Database and Web/CGI Approach in the Analysis and Data Presentation of Large-Scale BAC-EST Hybridization Screens
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Kim, Y.
• 46. PCR Product Size Measurement using MALDI Mass Spectrometry
• Kimberly, William 
• 137.  Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• Kipart, D. 
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality
• Kirillov, Eu 
• 53.  Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Klock, Heath 
• 16.  Mutagenesis and Reaction Condition Studies of T7 RNA Polymerase Variants to Incorporate Deoxynucleotides
• Knuth, Mark
• 16.  Mutagenesis and Reaction Condition Studies of T7 RNA Polymerase Variants to Incorporate Deoxynucleotides
• Kobyashi, Arthur
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies
• 9.  Automation of Finishing at JGI-LLNL
• 31.  Laboratory Automation for Finish Sequencing at LLNL
• 86. JGI Informatics and the PSF Network
• 87. Verification of Finished Sequence at JGI-LLNL
• 88.  Informatics for Production Sequencing at LLNL
• Kodira, C. 
• 117. The Genome Sequence DataBase (GSDB):  Advances in Data Access, Analysis, and Quality 
• Koenig, Barbara A. 
• 188. Individualizing Medicine Through Genomics:  Medical and Social Implications
• Koga, Teiichiro
• 139.  Gene Expression in Cardiac Hypertrophy as Measured by cDNA Microarrays 
• Kolbe, William F.
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL
• Kolker, Natali 
• 116.  Improved Detection of Single Nucleotide Polymorphisms (SNPs)
• Konno, H.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Koonin, Eugene V.
• 152.  Genomics and Engineering of a Radioresistant Bacterium
• Koonin, S.
• 193.  The JASON Study of the Human Genome Project 
• Korenberg, J.R. 
• 57. Molecular Cytogenetics Comes of Age:  A Resource that Extends From "T" to Shining "T"
• Koriabine, Maxim
• 59.  New Host Strains for Stabilization and Modification of YAC Clones
• Kotani, Hirokazu
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Kotler, Lev 
• 35.  Long-Read DNA Sequencing by Capillary Array Electrophoresis 
• Kotval, J.S. 
• 174.  Medical Confidentiality in the Market Driven Managed Care Setting:  Does the Law Protect Against Misuse of DNA-Based Tests?
• Kouprina, Natalay 
• 59.  New Host Strains for Stabilization and Modification of YAC Clones
• 60.  Direct Isolation of a Centromeric Region from a Human Mini-Chromosome by in Vivo Recombination in Yeast 
• 63. Preparation of New BAC Vectors for BAC Cloning and Transformation-Associated Recombination ("TAR") Cloning
• Kozlovsky, J. 
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Kozyavkin, S.
• 17.  Megabase and Gigabase Templates:  Direct Automated Sequencing off Microbial and Eukaryotic Chromosomal DNA
• Kranmiller, Brent 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6.  A Comparison of Sequence Gap Closure Strategies
• 9.  Automation of Finishing at JGI-LLNL
• Kroutchinina, N. 
• 41. Integrated Microchip Devices for DNA Analysis 
• Kruper, John 
• 173. The Science and Issues of Human DNA Polymorphisms
• Kuczmarski, Tom 
• 127.  IMAGEne II:  EST Clustering and Ranking of I.M.A.G.E. cDNA Clones Corresponding to Known and Unknown Genes
• Kulikowski, Casimir
• 118. Analysis of Ribosomal RNa Sequences by Combinatorial Clustering
• Kulp, David 
• 96. Hidden Markov Models in Biosequence Analysis:  Recent Results and New Methods 
• Kuske, Cheryl R. 
• 164.  Identification, Isolation, and Genome Amplification of Abundant Non-Cultured Bacteria from Novel Phylogenetic Kingdoms in Two Extreme Surface Environments
• Kyrpides, N.C.
• 161. Genome Sequencing and Analysis 

L

• Ladner, Heidi 
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Lai, Z.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Lake, James A. 
• 107.  Comparative Analyses of Syntenic Blocks
• Lamerdin, Jane
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies 
• 7.  The SaF Finishing Tools
• 9.  Automation of Finishing at JGI-LLNL
• 31.  Laboratory Automation for Finish Sequencing at LLNL 
• 87. Verification of Finished Sequence at JGI-LLNL 
• 88.  Informatics for Production Sequencing at LLNL 
• 132.  Comparative Analysis of Structure and Function in an Imprinted Region of Proximal Mouse Chromosome 7 and the Related Region of Human Chromosome 19q13.4 
• Lancet, D.
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS) 
• Land, Miriam 
• 79. Visualization, Navigation, and Query of Genomes:  The Genome Channel and Beyond
• 80. Genome Annotation Data Management and Data Administration: Developing Summary Results for User Navigation, Genome Research, Improved Data Processing, and Quality Metrics
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation 
• Lander, Eric
• 30.  Co-Development of High Throughput Sequencing Systems with the Joint Genome Institute
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• Landers, Rich
• 91.  A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• Langhoff, Dan P.
• 58.  Automated Purification of Blood or Bacterial Genomic DNA
• LaPlante, M.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Larimer, Frank
• 167.  Annotation of Microbial Genomes
• Larionov, Vladimir 
• 59.  New Host Strains for Stabilization and Modification of YAC Clones
• 60.  Direct Isolation of a Centromeric Region from a Human Mini-Chromosome by in Vivo 
• 63. Preparation of New BAC Vectors for BAC Cloning and Transformation-Associated Recombination ("TAR") Cloning
• Lato, Bernadette
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries 
• 74. Completing the Sequence-Ready Map of Chromosome 19 
• Lazar, M.I.
• 144.  Microfabricated Microfluidic Devices for Proteome Mapping
• Lazaro, D.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Le, Philip
• 125. The DOTS Resource for Gene Expression Analysis and Genome Annotation
• Leavitt, Mark C.
• 143.  Ribozyme Gene Delivery for Gene Target Discovery and Functional Validation
• LeBlanc, G. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Lee, Byeong-Jae
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2 
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2 
• Lee, E.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Lee, H-M. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Lee, Jonghyeob
• 72.  An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• 99. A Relational Database and Web/CGI Approach in the Analysis and Data Presentation of Large-Scale BAC-EST Hybridization Screens
• Lenhert, N.
• 69.  One Tier Pooling of a Total Genomic BAC Library 
• Leone, Joseph
• 91.  A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• LeProust, Eric
• 51. A Light-Directed DNA/RNA-Microarray Synthesizer
• Lesley, Scott
• 16.  Mutagenesis and Reaction Condition Studies of T7 RNA Polymerase Variants to Incorporate Deoxynucleotides 
• Levy, Samuel
• 105.  Sequence Landscapes
• Lewis, N.
• 193.  The JASON Study of the Human Genome Project 
• Lewis, Suzanna
• 92. Data Visualization for Distributed Bioinformatics 
• 141. Resources for Functional Genomics in Drosophila
• Li, B.
• 120. Ribosomal Database Project II 
• Li, Fugen
• 105.  Sequence Landscapes
• Li, Gary
• 163.  Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways
• Li, Lei
• 94. Probabilistic Basecalling
• Li, Qingbo 
• 33.  Fully Automated DNA Sequencing with a Commercial 96-Capillary Array Instrument 
• Li, Xinqiang
• 143.  Ribozyme Gene Delivery for Gene Target Discovery and Functional Validation
• Liang, Xiaoli
• 150. Archael Proteomics 
• Liao, Guochun
• 141. Resources for Functional Genomics in Drosophila
• Liau, Benjamin
• 98. Mapping Data 
• Liberzon, A.
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS) 
• Lies, Douglas
• 163.  Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways
• Lilburn, T.G.
• 120. Ribosomal Database Project II 
• Lim, Chang-Su
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource 
• 99. A Relational Database and Web/CGI Approach in the Analysis and Data Presentation of Large-Scale BAC-EST Hybridization Screens
• Lin, J. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Lin, K. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Lin, Sluan D. 
• 140. Genetic Factors Affecting Globin Switching
• Linton, Lauren
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• Lipton, Mary S.
• 149.  Rapid and Sensitive Characterization of Proteomes; an Adjunct to the Genome 
• Liu, Changsheng
• 33.  Fully Automated DNA Sequencing with a Commercial 96-Capillary Array Instrument 
• Liu, Lei
• 91.  A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• Liu, Stephenie 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Liu, Y.
• 144.  Microfabricated Microfluidic Devices for Proteome Mapping
• LoCascio, Phil
• 78. The Genome Annotation Collaboration:  An Overview
• 84. High-Performance Computing Servers 
• Longmire, J.L.
• 2.  Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes 
• 69.  One Tier Pooling of a Total Genomic BAC Library 
• Lou, Yunian
• 32. Sheath-Flow Capillary Array DNA Sequencer Development at JGI/LBNL
• Lowry, Steve 
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5 
• 97. Java Based Restriction Map Display 
• Lu, Xiaochen
• 132.  Comparative Analysis of Structure and Function in an Imprinted Region of Proximal Mouse Chromosome 7 and the Related Region of Human Chromosome 19q13.4 
• Lucas, Susan
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Lumm, W.
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Lvovsky, L.
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS)
• Lyamichev, Victor
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes 

M

• Ma, Jiong
• 122. Genomic Hot Spots for Homologous Recombination 
• MacConnell, William P.
• 58.  Automated Purification of Blood or Bacterial Genomic DNA
• Macht, Madison
• 6.  A Comparison of Sequence Gap Closure Strategies 
• 9.  Automation of Finishing at JGI-LLNL 
• MacMillan, S.
• 111.  Screening for Large-Scale Variations in Human Genome Structure 
• Madan, Anup
• 3.  Sequencing Human Chromosome 14 and the Mouse Major Histocompatibility Locus:  A Progress Report
• Maffitt, David R.
• 115.  Allele Frequency Estimation from Sequence Trace Data
• Mahairas, G.G.
• 65.  Characterization of a BAC Clone Resource for Human Genomic Sequencing:  Analysis of 150 Mb of Human STCs and Implications for Human Genomic Sequencing 
• Mahairas, Gregory G.
• 20a. Construction of a Genome-Wide, Highly Characterized Clone Resource for Genome Sequencing
• Maidak, B.
• 120. Ribosomal Database Project II 
• Majeski, A.
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Makarova, Kira S.
152.  Genomics and Engineering of a Radioresistant Bacterium
• Malek, Joel
• 66.  Human BAC End Sequencing
• Maltbie, M. 
• 69.  One Tier Pooling of a Total Genomic BAC Library
• Maltsev, Natalia
165. WIT System:  Advantages of Parallel Analysis of Multiple Genomes
• Malykh, A. 
• 17.  Megabase and Gigabase Templates:  Direct Automated Sequencing off Microbial and Eukaryotic Chromosomal DNA
• Malykh, O.
• 17.  Megabase and Gigabase Templates:  Direct Automated Sequencing off Microbial and Eukaryotic Chromosomal DNA
• Mandrekar, Michelle
• 16.  Mutagenesis and Reaction Condition Studies of T7 RNA Polymerase Variants to Incorporate Deoxynucleotides
• Mank, P. 
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Mann, Janice L.
• 192.  Human Genome Program Coordination Activities
• Mansfield, Betty K.
• 191.  Human Genome Management Information System:  Making Genome Project Science and Implications Accessible
• Markillie, Lye Meng
• 153.  Functional Analysis of Deinococcus radiodurans Genomes by Targeted Mutagenesis
• Martin, Christopher H. 
• 137.  Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region
• Martin, Joel
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5 
• Martin, Sheryl A. 
• 78. The Genome Annotation Collaboration:  An Overview 
• 80. Genome Annotation Data Management and Data Administration: Developing Summary Results for User Navigation, Genome Research, Improved Data Processing, and Quality Metrics
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation
• 191.  Human Genome Management Information System:  Making Genome Project Science and Implications Accessible
• Marzari, Roberto 
• 145. Using Phage Display in Functional Genomics
• Mason, Tanya 
• 158.  The Chlorobium tepidum Genome Sequencing Program at TIGR 
• Mast, Andrea L.
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes
• Mathies, Richard A. 
• 19.  Synthesis, Characterization, and Potential Applications of Biotinylated Energy Transfer Oligonucleotides
• 36.  DNA Sequencing Using Capillary Array Electrophoresis 
• 37. Focused Single Molecule DNA Detection in Microfabricated Capillary Electrophoresis Chips 
• 38. Ultra-High Throughput DNA Genotyping and Sequencing on Radial Capillary Array Electrophoresis Microplates 
• 40.  Integrated Electrochemical Detection with Microfabricated Capillary Electrophoresis Chips
• Maturra, S.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Mayor, Chris
• 106.  Protein Fold Prediction in the Context of Fine-Grained Classifications
• Mazzarella, R. 
• 111.  Screening for Large-Scale Variations in Human Genome Structure 
• McConnell, Laura L.
• 188. Individualizing Medicine Through Genomics:  Medical and Social Implications
• McCready, Paula
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 88.  Informatics for Production Sequencing at LLNL
• McCrow, John
• 112.  Probabilistic Physical Map Assembly
• McEwan, Paul
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• McGuire, Abby 
• 135. Comparative Functional Genomics 
• McInerney, Joseph D. 
• 183.  Genes, Environment, and Human Behavior
• McKernan, Kevin
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• McKnight, T.
• 41. Integrated Microchip Devices for DNA Analysis
• McNeil, L.K.
• 161. Genome Sequencing and Analysis
• McNulty, John J. 
• 21.  Vectors for Using Nested Deletions to Sequence Either Strand of Cloned DNA
• McPherson, John D. 
• 62.  A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• Meincke, Linda 
• 77.  High Throughput Fingerprinting and Contig Assembly to Supply Sequence Ready Templates to the JGI-PSF
• Menon, Angeil
• 150. Archael Proteomics
• Mentzer, Sarah
• 129. Using Overlapping Deletions in the Analysis of Recessive Phenotypes
• Meyne, J.
• 69.  One Tier Pooling of a Total Genomic BAC Library
• Michaud, Edward J.
• 20.  Development of a Multilabel DNA Mapping Technique Using SERS Gene Probes
• 130. Germline Deletion Complexes in Embryonic Stem Cells for Mapping Gene Function in Mouse-Human Homology Regions 
• 131. Mouse Genetics and Mutagenesis for Functional Genomics:  The Chromosome 7 and 15 Mutagenesis Programs at the Oak Ridge National Laboratory 
• Micklos, David
• 173. The Science and Issues of Human DNA Polymorphisms
• Milgram, Jules
125. The DOTS Resource for Gene Expression Analysis and Genome Annotation
• Miller, Arthur W.
• 35.  Long-Read DNA Sequencing by Capillary Array Electrophoresis
• 110a. Expert System for Long-Read Base-Calling in DNA Sequencing by Capillary Electrophoresis
• Miller, Jeffrey H.
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Miller, Robert
• 148. Predictions of Protein Structural Domains 
• Miller, Susan J.
• 95. The FAKtory Sequence Assembly System 
• Miller, Webb 
• 137.  Identification and Functional Analysis of Evolutionarily Conserved Non-Coding Sequences in the Human 5q31 Cytokine Cluster Region 
• Mills, Marissa
• 191.  Human Genome Management Information System:  Making Genome Project Science and Implications Accessible
• Minton, Kenneth W.
• 152.  Genomics and Engineering of a Radioresistant Bacterium 
• Mirokhin, Y. 
• 17.  Megabase and Gigabase Templates:  Direct Automated Sequencing off Microbial and Eukaryotic Chromosomal DNA 
• Mirzabekov, A. 
• 53.  Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Mishra, B.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Mitchell, Steve
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource 
• Mitra, Rob 
• 135. Comparative Functional Genomics 
• Miyajima, Nobuyuki
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Moon, Eunpyo
• 4.  Physical Mapping and Sequencing of Human Chromosome 16p12.1-11.2
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource 
• 72.  An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• 73. A 12 Mbp Completely Contiguous Sequence-Ready BAC Contig in Human Chromosome 16p13.1-11.2 
• 99. A Relational Database and Web/CGI Approach in the Analysis and Data Presentation of Large-Scale BAC-EST Hybridization Screens
• Moore, Barry 
• 146. One Gene - How Many Proteins?
• Moore, Jonathan E. 
• 107.  Comparative Analyses of Syntenic Blocks 
• Morris, Will
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• Moyzis, Robert K.
• 5. Human Telomere Mapping and Sequencing 
• Muchnik, Ilya
• 118.  Analysis of Ribosomal RNA Sequences by Combinatorial Clustering 
• Multimegabase Sequencing Group
• 3.  Sequencing Human Chromosome 14 and the Mouse Major Histocompatibility Locus:  A Progress Report
• Mundt, Mark O.
• 2.  Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 8.  Process Description of a 5 Mb / Year Finish Sequencing Operation Using 100% Plasmid Double End Sequencing 
• 10.  Sequence Validation and Quality Assessment at the Joint Genome Institute
• 11.  LANL Finishing Team Accomplishments in FY98
• 93.  A Figure of Merit for DNA Sequence Data
• Munk, A.C.
• 2.  Genomic Sequencing of 3 Mb of Human Chromosome 16p13.3 Containing 4 Disease Genes
• 11.  LANL Finishing Team Accomplishments in FY98
• Munn, Maureen
• 186.  The High School Human Genome Program
• Mural, Richard
• 78. The Genome Annotation Collaboration:  An Overview
• 79. Visualization, Navigation, and Query of Genomes:  The Genome Channel and Beyond
• 82. Genome Channel Analysis Engine:  A System for Automated Analysis of Genome Channel Data 
• 83. GRAIL-EXP:  Multiple Gene Modeling Using Pattern Recognition and Homology
• 167.  Annotation of Microbial Genomes
• Muramatsu, M.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Muzny, Donna M.
• 13. Concatenation cDNA Sequencing and Analysis of 500 Human Brain cDNA Clones
• Myambo, Ken
• 72.  An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• Myers, Eugene W.
• 95. The FAKtory Sequence Assembly System 

N

• Nagase, Takahiro
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Nealson, Kenneth H.
• 155. Complete Genome Sequencing of Shewanella putrefaciens 
• 163.  Exploring Whole Genome Sequence Information for Defining the Functions of Unknown Genes and Regulatory Networks in Dissimilatory Metal Reduction Pathways
• Needham, Cynthia A.
• 177.  Microbial Literacy Collaborative:  Intimate Strangers:  Unseen Life on Earth
• Nelson, Chad 
• 146. One Gene - How Many Proteins? 
• Nelson, Dave
• 94. Probabilistic Basecalling
• Nelson, K.E.
• 168.  Insights into Evolution from the Thermotoga maritima Genome
• Neri, Bruce P.
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes 
• Ng, Sun-Yu
• 122. Genomic Hot Spots for Homologous Recombination
• Nguysen, Tuyen
• 58.  Automated Purification of Blood or Bacterial Genomic DNA
• Ni, L. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Nickerson, Deborah A. 
• 116.  Improved Detection of Single Nucleotide Polymorphisms (SNPs) 
• Nierman, William C.
• 66.  Human BAC End Sequencing
• 151.  Microbial Genome Sequencing and Analysis at TIGR
• 158.  The Chlorobium tepidum Genome Sequencing Program at TIGR 
• Nolan, John P.
• 43.  High Throughput SNP Discovery and Scoring Using Bead-Based Flow Cytometry
• Nolan, Matt P. 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies
• 7.  The SaF Finishing Tools
• 9.  Automation of Finishing at JGI-LLNL 
• 31.  Laboratory Automation for Finish Sequencing at LLNL
• 87. Verification of Finished Sequence at JGI-LLNL 
• 88.  Informatics for Production Sequencing at LLNL 
• Nölling, J. 
• 160. Microbial Genome Sequencing and Comparative Analysis
• Nomura, Nobuo
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Nowak, Norma J.
• 62.  A Resource of Mapped BAC Clones for Identifying Cancer Chromosome Aberrations
• Nowotny, Volker
• 112.  Probabilistic Physical Map Assembly
• Noya, D.
• 57. Molecular Cytogenetics Comes of Age:  A Resource that Extends From "T" to Shining "T"

O

• Ohara, Osamu
• 14a. Complete Sequence Analysis of 918 Human cDNA Clones Harboring Long and Nearly Full-Length Inserts
• Okazaki, Y.
• 16a. Full-length Mouse cDNA Analysis by Automated Fluorescent 384 Capillary sequencer System (RISA; Riken Integrated Sequence Analysis System)
• Olman, Victor
• 167.  Annotation of Microbial Genomes
• Olsen, Anne S.
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 70. High Density Colony Filter Production and Automated Data Analysis for Efficient Hybridization Screening of BAC Libraries 
• 74. Completing the Sequence-Ready Map of Chromosome 19
• 97. Java Based Restriction Map Display 
• 132.  Comparative Analysis of Structure and Function in an Imprinted Region of Proximal Mouse Chromosome 7 and the Related Region of Human Chromosome 19q13.4
• 133. Differential Expansion of Homologous Zinc-Finger Gene Families in Human Chromosome 19q13.2 and Mouse Chromosome 7 
• Olsen, Gary J.
• 150. Archael Proteomics
• 161. Genome Sequencing and Analysis
• Olson, Ryan
• 16.  Mutagenesis and Reaction Condition Studies of T7 RNA Polymerase Variants to Incorporate Deoxynucleotides 
• Ordonez, Patricia
• 185.  The Hispanic Educational Genome Project 
• Oshimura, Mitsuo 
• 60.  Direct Isolation of a Centromeric Region from a Human Mini-Chromosome by in Vivo Recombination in Yeast
• Osoegawa, Kazutoyo
• 63. Preparation of New BAC Vectors for BAC Cloning and Transformation-Associated Recombination ("TAR") Cloning
• 64.  "RPCI" Human and Mouse Bacterial Artificial Chromosome Libraries:  Construction and Characterization
• Overbeek, Ross
• 165. WIT System:  Advantages of Parallel Analysis of Multiple Genomes
• Overton, Chris
• 78. The Genome Annotation Collaboration:  An Overview
• 125. The DOTS Resource for Gene Expression Analysis and Genome Annotation
• Ow, David J.
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies 
• 9.  Automation of Finishing at JGI-LLNL 
• 31.  Laboratory Automation for Finish Sequencing at LLNL
• 88.  Informatics for Production Sequencing at LLNL 

P

• Palmer, Joel
• 101. Arraydb:  CGH-Array Tracking Database 
• Parang, Morey
• 78. The Genome Annotation Collaboration:  An Overview
• 79. Visualization, Navigation, and Query of Genomes:  The Genome Channel and Beyond 
• 80. Genome Annotation Data Management and Data Administration: Developing Summary Results for User Navigation, Genome Research, Improved Data Processing, and Quality Metrics 
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation 
• 82. Genome Channel Analysis Engine:  A System for Automated Analysis of Genome Channel Data 
• 167.  Annotation of Microbial Genomes
• Park, Bum-chan 
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource
• 72.  An Arrayed BAC Resource for the High Resolution Mapping of Cancer-Related Chromosome Aberrations
• 99. A Relational Database and Web/CGI Approach in the Analysis and Data Presentation of Large-Scale BAC-EST Hybridization Screens
• Park, Gigi E.
• 75.  High-Throughput Multiplexed Fluorescent-Labeled Fingerprinting of BAC Clones
• 156. Whole Genome Sequence and Structural Proteomics of Pyrobaculum aerophilum
• Park, Hee Moon
• 67.  Construction of a Genome-Wide Human BAC-Unigene Resource
• Parker, C.T.
• 120. Ribosomal Database Project II 
• Parson-Quintana, Beverly 
• 8.  Process Description of a 5 Mb / Year Finish Sequencing Operation Using 100% Plasmid Double End Sequencing
• Patwell, D. 
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Paulus, M.J. 
• 128. Screening for Mutant Phenotypes in Mice at ORNL 
• Pavlin, Boris
• 100a. Recent Advances in High-Throughput Genomic Sequencing: Magnetic Capture of Plasmids
• Pavlik, Peter 
• 145. Using Phage Display in Functional Genomics 
• Paxia, S. 
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping
• Pellois, Jean Philippe 
• 51. A Light-Directed DNA/RNA-Microarray Synthesizer 
• Peng, Ze 
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5 
• Percus, Allon G.
• 93.  A Figure of Merit for DNA Sequence Data
• Petrov, Sergey 
• 78. The Genome Annotation Collaboration:  An Overview
• 80. Genome Annotation Data Management and Data Administration: Developing Summary Results for User Navigation, Genome Research, Improved Data Processing, and Quality Metrics 
• 81. Data Management for Genome Analysis and Annotation:  Engineering a Fundamental Infrastructure for Data That Supports Collaboration in Genome Annotation
• Phan, Hoan 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies 
• 9.  Automation of Finishing at JGI-LLNL
• Phillips, J.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Pinkel, Daniel 
• 101. Arraydb:  CGH-Array Tracking Database 
• Pitluk, Sam 
• 86. JGI Informatics and the PSF Network 
• Plajzer-Frick, Ingrid 
• 76. Progress Towards a High Resolution Sequence-Ready Map of Human Chromosome 5 
• Politte, David G.
• 115.  Allele Frequency Estimation from Sequence Trace Data
• Pollard, M.
• 22. Direct Conversion of PCR Products into Bidirectional Sequencing Fragments
• 23.  Analysis of Gradients of Polymer Concentration or Ionic Strength
• Porter, B.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Porter, Kenneth W.
• 22. Direct Conversion of PCR Products into Bidirectional Sequencing Fragments 
• Pothier, B.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Poundstone, Pat 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• Prabhakar, S.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Praissman, Laura
• 21.  Vectors for Using Nested Deletions to Sequence Either Strand of Cloned DNA
• Pramanik, S.
• 120. Ribosomal Database Project II 
• Prange, Christa 
• 127.  IMAGEne II:  EST Clustering and Ranking of I.M.A.G.E. cDNA Clones Corresponding to Known and Unknown Genes
• Prati, Paolo
• 49.  Manipulation of Single DNA Molecules by Induced-Dipole Forces in Micro-Fabricated Structures
• Proudnikov, D.
• 53.  Sequence Analysis and Thermodynamic Studies of Short DNA Duplexes on Oligonucleotide Generic Microchip
• Prudent, James
• 42. Single Nucleotide Polymorphism Detection and Identification Directly from Human Genomic DNA by Invasive Cleavage of Oligonucleotide Probes 
• Pusch, Gordon 
• 165. WIT System:  Advantages of Parallel Analysis of Multiple Genomes

Q

• Qi, R.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Qin, Shizhen
• 3.  Sequencing Human Chromosome 14 and the Mouse Major Histocompatibility Locus:  A Progress Report 
• Qin, Wei 
• 98. Mapping Data
• Qiu, D. 
• 160. Microbial Genome Sequencing and Comparative Analysis 
• Qiu, Yang
• 138.  Discovering the Genes Affected by Schizophrenia Using DNA Micro-Array
• Quan, Glenda G. 
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing
• 6.  A Comparison of Sequence Gap Closure Strategies
• 7.  The SaF Finishing Tools
• 9.  Automation of Finishing at JGI-LLNL
• 31.  Laboratory Automation for Finish Sequencing at LLNL
• Quesada, Mark A.
• 23.  Analysis of Gradients of Polymer Concentration or Ionic Strength

R

• Radnedge, Lyndsay
• 162. Use of Suppressive Subtractive Hybridization to Identify Genomic Differences among Enteropathogenic Strains of Yersinia enterocolitica and Yersinia pseudotuberculosis 
• Raja, Mugasimangalam C.
• 14.  Cosmid Finishing and Full Insert cDNA Sequencing Using Differential Extension with Nucleotide Subsets (DENS) 
• 18. PCR Using Branched Modular Primers
• Ralston, Pam
• 135. Comparative Functional Genomics
• Ramanathan, A.
• 55. Optical Mapping:  A Complete System for Whole Genome Shotgun Mapping 
• Ramirez, Melissa
• 6.  A Comparison of Sequence Gap Closure Strategies
• 9.  Automation of Finishing at JGI-LLNL 
• 87. Verification of Finished Sequence at JGI-LLNL 
• Ramsey, J.M. 
• 41. Integrated Microchip Devices for DNA Analysis 
• 144.  Microfabricated Microfluidic Devices for Proteome Mapping 
• Ramsey, R.S.
• 144.  Microfabricated Microfluidic Devices for Proteome Mapping 
• Ravi, Nori
• 91.  A Graphical Work-Flow Environment Seamlessly Integrating Database Querying and Data Analysis
• Reeve, J.N.
• 160. Microbial Genome Sequencing and Comparative Analysis
• Regala, Warren
• 1.  Uncovering the Riches of Human Chromosome 19 Through Genomic Sequencing 
• 6.  A Comparison of Sequence Gap Closure Strategies 
• 9.  Automation of Finishing at JGI-LLNL 
• Rehm, E. Jay 
• 141. Resources for Functional Genomics in Drosophila 
• Reich, Claudia I.
• 150. Archael Proteomics
• 161. Genome Sequencing and Analysis 
• Reilly, Philip R. 
• 175. Geneletter:  An Internet Newsletter on Ethical, Legal, and Social Issues in Genetics
• Reiter, C. 
• 25. Prep Track I - A Dynamic Approach to Liquid Handling Robotics
• 26. PrepTrack II Design: Lessons Learned from PrepTrack I
• Ren, Xiaojia 
• 124.  Generation of Large-Insert Mouse cDNA Libraries
• Richardson, Charles