1997 DOE Human Genome Program Contractor-Grantee Workshop VI

Mapping and Resources Table of Contents of abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI November 9-13, 1997, Santa Fe, NM
Home PDF Sequencing Table of Contents Abstracts Sequencing Technologies Table of Contents Abstracts Mapping and Resources Table of Contents Abstracts Informatics Table of Contents Abstracts Ethical, Legal, and Social Issues Table of Contents Abstracts Infrastructure Table of Contents Abstracts Ordering Information	Development and Application of Subtractive Hybridization Strategies to Facilitate Gene Discovery Maria de Fatima Bonaldo, Greg Lennon and Marcelo Bento Soares The University of Iowa, Iowa City, IA EURO-IMAGE: the European IMAGE Consortium for Integrated Molecular Analysis of Human Gene Transcripts Auffray, C.¹, Devignes, M.D.¹, Pietu, G.¹, Ansorge, W.², Schwager, C.², Ballabio, A.³, Borsani, G.³, Banfi, S.³, Estivill, X.⁴, Lynch, M.⁴, Gibson, K.⁵, Mundy, C.⁵, Lehrach, H.⁶, Poustka, A.⁷, Wiemann, S.⁷, Korn, B.⁷, O'Brien, J.⁷, Uhlen, M.⁸, Lundeberg, J.⁸ ¹CNRS UPR 420, BP 8, 94801 Villejuif cedex, France ² EMBL, Postfach 10.2209, 6900 Heidelberg, Germany ³ TIGEM, Via Olgettina 58, 20132 Milano, Italy ⁴ IRO, Hospital Duran I Reynals, Autovia de Castelldefels 2,7, Barcelona, Spain ⁵ HGMP, Hinxton, CB10 1RQ, United Kingdom ⁶ MPI, Ihnerstrasse 73, Dahlem, 14195 Berlin, Germany ⁷ DKFZ, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany ⁸ KTH, Teknikringen 34, 10044 Stockholm, Sweden The Functional Genomics Initiative at Oak Ridge National Laboratory Dabney Johnson, Monica Justice, Ken Beattie, Michelle Buchanan, Michael Ramsey, Rose Ramsey, Michael Paulus, Nance Ericson, David Allison, Reid Kress, Richard Mural, Ed Uberbacher, Reinhold Mann Life Sciences, Instrumentation and Controls, Chemical Technology, and Robotics and Process Systems Divisions, Oak Ridge National Laboratory, Oak Ridge TN 37831 Defining the Function of the Human DNA Repair Protein XPF by Comparative Genomics and Protein Chemistry Sandra L. McCutchen-Maloney, Mark Shannon, Jane Lamerdin and Michael P. Thelen Molecular and Structural Biology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550 Direct Isolation of Functional Copies of the Human HPRT Gene by TAR Cloning Using One Specific Targeting Sequence Natalay Kouprina, Lois Annab, Michael A. Resnick, J. Carl Barrett and Vladimir Larionov*** Laboratory of Molecular Genetics and Laboratory of Molecular Carcinogenesis, National Institute of Environmental Health Sciences, Research Triangle Park NC 27709, USA Mobile Elements and DNA Integration* Jerzy Jurka Genetic Information Research Institute, Palo Alto, USA *Study of Electric Field-Induced Transformation of Escherichia coli* with Large DNA Using DH10B Cells Alexander Boitsov^1,2, Boris Oskin¹, Pieter J. de Jong² ¹ Saint Petersburg State Technical University, Department of Biophysics, St. Petersburg 195251, Russia, ² Roswell Park Cancer Institute, Department of Human Genetics, Elm and Carlton St., Buffalo, NY 14263 Progress Towards the Construction of BAC Libraries from Flow Sorted Human Chromosomes Jonathan L. Longmire, Nancy C. Brown, Evelyn W. Campbell, Mary L. Campbell, John J. Fawcett, Phil Jewett, Mary Maltbie, and Larry L. Deaven Life Sciences Division and Center for Human Genome Studies, Los Alamos National Laboratory, Los Alamos, NM 87545. Construction of Human Chromosome 5 and 16 Specific Libraries by TAR Cloning N. Kouprina, M. Campbell, J. Graves, E. Campbell, L. Meincke, J. Tesmer, N. Brown, J. Fawcett, P. Jewett, R. K. Moyzis, N. Doggett, L. Deaven, and V. Larionov Los Alamos National Laboratory, Life Sciences Division and Center for Human Genome Studies, National Institute of Environmental Health Services, Laboratory of Molecular Genetics, Research Triangle Park, NC 27709 Construction of Genome-Wide Physical BAC Contigs Using Mapped cDNA as Probes: Toward an Integrated Bac Library Resource for Genome Sequencing and Analysis Steve C. Mitchell, Diana Bocskai, Yicheng Cao², Robert Xuequn Xu, Mei Wang, Troy Moore³, So Hee Dho⁴, Enrique Colayco², Christie Gomez, Gabriella Rodriguez, Annabel Echeverria, Melvin I. Simon², and Ung-Jin Kim² ²Biology, California Institute of Technology ³ Research Genetics, Huntsville, AL ⁴ Seoul National University, Seoul, Korea Current Status of the Integrated Chromosome 16 Map N. A. Doggett, L. A. Goodwin, J. G. Tesmer, L. J. Meincke, D. C. Bruce, M. R. Altherr, R. D. Sutherland, U.-J. Kim, and L. L. Deaven Los Alamos National Laboratory, Los Alamos, New Mexico 87545 and California Institute of Technology, Pasadena, California 91125 Construction of Sequence-Ready Physical Map of Human Chromosome 16p13.1-11.2 Region** Yicheng Cao, Diana Bocskai, Steve C. Mitchell, Robert Xuequn Xu, So Hee Dho#, Jun-Ryul Huh#, Byeong-Jae Lee#, Anna Glodek, Mei Wang, Enrique Colayco, Gony H. Kim, Christie Gomez, Gabriella Rodriguez, Judith G. Tesmer, Annabel Echeverria, Robin Hua Li, Melvin I. Simon, Norman A. Doggett, Mark D. Adams, and Ung-Jin Kim * The Institute for Genomic Research, Rockville, MD Human Genome Center, LANL, Los Alamos, NM # Seoul National University, Seoul, Korea Large-Scale BAC End Sequencing to Aid Sequence-Ready Map Construction Mark D. Adams, Steve Rounsley, Casey Field, Jenny Kelley, Steve Bass, Brook Craven, and J. Craig Venter The Institute for Genomic Research, Rockville, MD 20850 The Sequence Tagged Connector (STC) Approach to Genomic Sequencing: Accelerating the Complete Sequencing of the Human Genome Gregory G. Mahairas, Keith D. Zackrone, Stephanie Tipton, Sarah Schmidt, Alan Blanchard, Anne West, Joe Slagel and Leroy Hood Department of Molecular Biotechnology, University of Washington, Seattle, WA 98195 Amplification and Sequencing of End Fragments from Bacterial Artificial Chromosome (BAC) Clones by Single-Primer PCR Joomyeong Kim, Ethan A. Carver, and Lisa Stubbs Human Genome Center, Lawrence Livermore National Lab., PO Box 808, L-452, Livermore, CA 94551 Construction of a High Resolution P1/PAC/BAC Map in the Distal Long Arm of Chromosome 5 for Direct Genomic Sequencing Ze Peng, Steve Lowry, Duncan Scott, Yiwen Zhu, Eddy Rubin and Jan-Fang Cheng Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 An Integrated Genetic and Physical Map of Human Chromosome 19: A Resource for Large Scale Genomic Sequencing and Gene Identification L.A. Gordon, A. Georgescu, M. Christensen, S. Ross, L. Woo, L.K. Ashworth, H. W. Mohrenweiser, A.V. Carrano and A. S. Olsen Human Genome Center, Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, Livermore, CA 94550 Mapping by Two-Dimensional Hybridization Cliff S. Han, Mark O. Mundt, Linda J. Meincke, Judy G. Tesmer, Robert K. Moyzis, Larry L. Deaven and Norman A. Doggett Life Sciences Division and Center for Human Genome Studies, Los Alamos National Laboratory, Los Alamos, NM 87545 Estimates of Gene Densities in Human Chromosome Bands Norman A. Doggett, Robert D. Sutherland and David C. Torney Theoretical Division, Life Sciences Division, and OHER Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM Mapping and Functional Analysis of the Mouse Genome Dabney K. Johnson, Edward J. Michaud, and Monica J. Justice Mammalian Genetics Section, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-8080 The Albino (c) Region of Mouse Chr 7: A Model for Mammalian Functional Genomics M.J. Justice¹, E.M. Rinchik², D.A. Carpenter¹, S.E. Thomas¹, and D.K. Johnson¹ ¹Mammalian Genetics Section, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 ²Sarah Lawrence College, Bronxville, New York 10708 Comparative Mapping and Expression Study of Two H19q13.4 Zinc-Finger Gene Clusters in Man and Mouse Joomyeong Kim, Mark Shannon, Linda Ashworth, Elbert Branscomb, and Lisa Stubbs Human Genome Center, Lawrence Livermore National Laboratory, Livermore, CA 94551. One Origin of Man: Primate Evolution Through Genome Duplication Julie R. Korenberg, Xiao-Ning Chen, Steve Mitchell, Rajesh Puri, Zheng-Yang Shi and Dean Yimlamai Medical Genetics Birth Defects Center, The CSMC Burns & Allen Research Institute, UCLA School of Medicine, Los Angeles, CA Third-Strand In Situ Hybridization (TISH) to Non-Denatured Metaphase Spreads and Interphase Nuclei Marion D. Johnson and Jacques R. Fresco Princeton University/Washington Road/Princeton, NJ 08544 New Male-Specific, Polymorphic Tetranucleotide Microsatellites from the Human Y Chromosome P. Scott White¹, Owatha L. Tatum^1,2, Larry Deaven¹, Jonathan L. Longmire¹ ¹Genomics Group and Center for Human Genome Studies, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, NM 87545 and ²Dept. of Biological Sciences, Texas Tech University, Lubbock, TX 79409 In Vivo Libraries of the Human Genome in Mice as a Reagent to Sift Genomic Regions for Function Rubin, E.M., Zhu, Y., Fraser, K., Ueda, Y., Smith, D.J., Symula, D., Cheng, J.F. Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 Automatic BAC Contig Assembly by Three-Color Fluorescent Restriction Fragments Y. Ding, M. Johnson, Y. Chen, J. Colayco, J. Melnyk, S. Khan, D. Gilbert, and H. Shizuya Division of Biology, Caltech, Pasadena, CA 91125, PE Applied Biosystems, Foster City, CA 94404 Construction and Characterization of New BAC Libraries Y. Sheng, Y-J. Chen, C. Neal, and H. Shizuya Division of Biology, Caltech, Pasadena, CA 91125 Completing the BAC-Based Physical Map of Human Chromosome 22 Holger Schmitt, Mitzi Shpak, Yan Ding, Melvin Simon, and Hiroaki Shizuya Division of Biology, Caltech, Pasadena, CA 91125 A Subdermal Physiological Monitoring System For Mass Screening Mice In Gene Expression Studies M. N. Ericson, D. K. Johnson, R. S. Burlage, T. L. Ferrell, D. E. McMillan, K. G. Falter, A. D. McMillan, S. F. Smith, G. E. Jellison, and C. L. Britton, Jr. Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006 HLA Genotype Analysis of Chronic Beryllium Disease Sensitivity P. Scott White, Michelle Petrovic, Owatha L. Tatum, Nancy Lehnert, Usha S-Nair, Zaolin Wang, Larry L. Deaven, and Babetta Marrone Los Alamos National Laboratory, Life Sciences Division and Center for Human Genome Studies, Los Alamos, New Mexico 87545 A New Program to Develop a High-Resolution, High-Throughput Tomographic Imaging System for Mutagenized Mouse Phenotype Screening M.J. Paulus, H. Sari-Sarraf, D.K. Johnson, D.H. Lowndes, M. L. Simpson, C.L. Britton, Jr., F.F. Knapp, Jr., J.S. Hicks Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006 Quantitative Detection of Nucleic Acids by Invasive Cleavage of Oligonucleotide Probes Jeff G. Hall, Andrea L. Mast, Victor Lyamichev, James R. Prudent, Michael W. Kaiser, Tsetska Takova, Bob Kwiatkowski, Bruce Neri, and Mary Ann D. Brow** Third Wave Technologies, Inc., 2800 S. Fish Hatchery Rd., Madison, WI 53711 Quantitative DNA Fiber Mapping (QDFM) Techniques for Physical Map Construction and Quality Control* Heinz-Ulrich G. Weier, Stanislav Volik, Jenny Wu, Thomas Duell, Mei Wang, Ung-Jin Kim¹, Jan-Fang Cheng and Joe W. Gray Resource for Molecular Cytogenetics and Human Genome Center, Life Sciences Division, University of California, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, and ¹California Institute of Technology, Pasadena, CA Analysis of DNA Sequence Copy Number Variation in Breast Tumors and HPV16-Immortalized Cell Lines Using Comparative Genomic Hybridization to DNA Microarrays D. G. Albertson¹, R. Segraves², D. Sudar¹, S. Clark², C. Collins¹, C. Chen², W.-L. Kuo², D. Kowbel¹, S. H. Dairkee³, I. Poole⁴, M. Dürst⁵, J. W. Gray^1,2 , D. Pinkel^1,2 ¹ E. O. Lawrence Berkeley National Laboratory, ²University of California San Francisco, ³Geraldine Brush Cancer Research Institute, ⁴Vysis, Inc., ⁵Deutsches Krebsforschungszentrum Molecular Anatomy of a 20q13.2 Breast Cancer Amplicon C. Collins¹, J. Rommens², D. Kowbel¹, G. Nonet¹, L. Stubbs³, M. Shannon³, M. Wernick¹, J. Froula¹, G. Hutchinson⁴, T. Godfrey⁵, D. Polikoff¹, T. Cloutier¹, K. Myambo¹, C. Martin¹, M. Palazzolo¹, Dan Pinkel^1,5, D. Albertson^1,5, and J.W. Gray^1,5 ¹ Lawrence Berkeley National Laboratory, Berkeley, CA ² Hospital for Sick Children, Toronto, Canada ³ Lawrence Livermore National Laboratory, Livermore CA ⁴ RabbitHutch Biotechnology, B.C. Canada ⁵ University of California Cancer Center, San Francisco 3D Genetic Analysis of Thick Tissue Specimens SJ Lockett⁺, C Ortiz de Solorzano⁺, A Jones⁺, E Rodriguez⁺, K Chin^o, C Fernandez^o, D Sudar⁺, D Pinkel^+o, JW Gray^+o 0⁺Resource for Molecular Cytogenetics, Life Sciences Division, Ernest Orlando Lawrence Berkeley National Laboratory, Berkeley, CA 94720, ^oCancer Center, University of California, San Francisco, CA 94143 New Single Molecule Approaches to Genomic Analysis: Optical Mapping David C. Schwartz, Thomas Anantharaman, Christopher Aston, Ginger Clarke, Stephanie Delobette, Eileen Dimalanta, Joanne Edington, Ariella Evenzahav, Veronica Gibaja, Yuzhi Gao, Joe Giacalone, Catharina Hiort, Edward Huff, Junping Jing, John Lai, Ernest Lee, Jieyi Lin, Bud Mishra, Lei Ni, Brett Porter, Rong Qi, Arvind Ramanathan, Jason Reed, Akhtar Samad, Alex Shenker, Yianni Skiadas, Hui Wang, Jonathan J. Vafai, Weining Wang, Hongjuan Zhao New York University

Mapping and Resources
Table of Contents

of abstracts from the
DOE Human Genome Program Contractor-Grantee Workshop VI
November 9-13, 1997, Santa Fe, NM

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Sequencing: Table of Contents; Abstracts
Sequencing Technologies: Table of Contents; Abstracts
Mapping and Resources: Table of Contents; Abstracts
Informatics: Table of Contents; Abstracts
Ethical, Legal, and Social Issues: Table of Contents; Abstracts
Infrastructure: Table of Contents; Abstracts
Ordering Information

Development and Application of Subtractive Hybridization Strategies to Facilitate Gene Discovery
Maria de Fatima Bonaldo, Greg Lennon and Marcelo Bento Soares
The University of Iowa, Iowa City, IA
EURO-IMAGE: the European IMAGE Consortium for Integrated Molecular Analysis of Human Gene Transcripts
Auffray, C.¹, Devignes, M.D.¹, Pietu, G.¹, Ansorge, W.², Schwager, C.², Ballabio, A.³, Borsani, G.³, Banfi, S.³, Estivill, X.⁴, Lynch, M.⁴, Gibson, K.⁵, Mundy, C.⁵, Lehrach, H.⁶, Poustka, A.⁷, Wiemann, S.⁷, Korn, B.⁷, O'Brien, J.⁷, Uhlen, M.⁸, Lundeberg, J.⁸
¹CNRS UPR 420, BP 8, 94801 Villejuif cedex, France
² EMBL, Postfach 10.2209, 6900 Heidelberg, Germany
³ TIGEM, Via Olgettina 58, 20132 Milano, Italy
⁴ IRO, Hospital Duran I Reynals, Autovia de Castelldefels 2,7, Barcelona, Spain
⁵ HGMP, Hinxton, CB10 1RQ, United Kingdom
⁶ MPI, Ihnerstrasse 73, Dahlem, 14195 Berlin, Germany
⁷ DKFZ, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
⁸ KTH, Teknikringen 34, 10044 Stockholm, Sweden
The Functional Genomics Initiative at Oak Ridge National Laboratory
Dabney Johnson, Monica Justice, Ken Beattie, Michelle Buchanan, Michael Ramsey, Rose Ramsey, Michael Paulus, Nance Ericson, David Allison, Reid Kress, Richard Mural, Ed Uberbacher, Reinhold Mann
Life Sciences, Instrumentation and Controls, Chemical Technology, and Robotics and Process Systems Divisions, Oak Ridge National Laboratory, Oak Ridge TN 37831
Defining the Function of the Human DNA Repair Protein XPF by Comparative Genomics and Protein Chemistry
Sandra L. McCutchen-Maloney, Mark Shannon, Jane Lamerdin and Michael P. Thelen
Molecular and Structural Biology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550
Direct Isolation of Functional Copies of the Human HPRT Gene by TAR Cloning Using One Specific Targeting Sequence
Natalay Kouprina*, Lois Annab**, Michael A. Resnick*, J. Carl Barrett** and Vladimir Larionov*
*Laboratory of Molecular Genetics and **Laboratory of Molecular Carcinogenesis, National Institute of Environmental Health Sciences, Research Triangle Park NC 27709, USA
Mobile Elements and DNA Integration
Jerzy Jurka
Genetic Information Research Institute, Palo Alto, USA
Study of Electric Field-Induced Transformation of Escherichia coli with Large DNA Using DH10B Cells
Alexander Boitsov^1,2, Boris Oskin¹, Pieter J. de Jong²
¹ Saint Petersburg State Technical University, Department of Biophysics, St. Petersburg 195251, Russia, ² Roswell Park Cancer Institute, Department of Human Genetics, Elm and Carlton St., Buffalo, NY 14263
Progress Towards the Construction of BAC Libraries from Flow Sorted Human Chromosomes
Jonathan L. Longmire, Nancy C. Brown, Evelyn W. Campbell, Mary L. Campbell, John J. Fawcett, Phil Jewett, Mary Maltbie, and Larry L. Deaven
Life Sciences Division and Center for Human Genome Studies, Los Alamos National Laboratory, Los Alamos, NM 87545.
Construction of Human Chromosome 5 and 16 Specific Libraries by TAR Cloning
N. Kouprina, M. Campbell, J. Graves, E. Campbell, L. Meincke, J. Tesmer, N. Brown, J. Fawcett, P. Jewett, R. K. Moyzis, N. Doggett, L. Deaven, and V. Larionov
Los Alamos National Laboratory, Life Sciences Division and Center for Human Genome Studies, National Institute of Environmental Health Services, Laboratory of Molecular Genetics, Research Triangle Park, NC 27709
Construction of Genome-Wide Physical BAC Contigs Using Mapped cDNA as Probes: Toward an Integrated Bac Library Resource for Genome Sequencing and Analysis
Steve C. Mitchell, Diana Bocskai, Yicheng Cao², Robert Xuequn Xu, Mei Wang, Troy Moore³, So Hee Dho⁴, Enrique Colayco², Christie Gomez, Gabriella Rodriguez, Annabel Echeverria, Melvin I. Simon², and Ung-Jin Kim²
²Biology, California Institute of Technology
³ Research Genetics, Huntsville, AL
⁴ Seoul National University, Seoul, Korea
Current Status of the Integrated Chromosome 16 Map
N. A. Doggett, L. A. Goodwin, J. G. Tesmer, L. J. Meincke, D. C. Bruce, M. R. Altherr, R. D. Sutherland, U.-J. Kim, and L. L. Deaven
Los Alamos National Laboratory, Los Alamos, New Mexico 87545 and California Institute of Technology, Pasadena, California 91125
Construction of Sequence-Ready Physical Map of Human Chromosome 16p13.1-11.2 Region
Yicheng Cao, Diana Bocskai, Steve C. Mitchell, Robert Xuequn Xu, So Hee Dho#, Jun-Ryul Huh#, Byeong-Jae Lee#, Anna Glodek*, Mei Wang, Enrique Colayco, Gony H. Kim, Christie Gomez, Gabriella Rodriguez, Judith G. Tesmer**, Annabel Echeverria, Robin Hua Li, Melvin I. Simon, Norman A. Doggett**, Mark D. Adams*, and Ung-Jin Kim
* The Institute for Genomic Research, Rockville, MD
** Human Genome Center, LANL, Los Alamos, NM
# Seoul National University, Seoul, Korea
Large-Scale BAC End Sequencing to Aid Sequence-Ready Map Construction
Mark D. Adams, Steve Rounsley, Casey Field, Jenny Kelley, Steve Bass, Brook Craven, and J. Craig Venter
The Institute for Genomic Research, Rockville, MD 20850
The Sequence Tagged Connector (STC) Approach to Genomic Sequencing: Accelerating the Complete Sequencing of the Human Genome
Gregory G. Mahairas, Keith D. Zackrone, Stephanie Tipton, Sarah Schmidt, Alan Blanchard, Anne West, Joe Slagel and Leroy Hood
Department of Molecular Biotechnology, University of Washington, Seattle, WA 98195
Amplification and Sequencing of End Fragments from Bacterial Artificial Chromosome (BAC) Clones by Single-Primer PCR
Joomyeong Kim, Ethan A. Carver, and Lisa Stubbs
Human Genome Center, Lawrence Livermore National Lab., PO Box 808, L-452, Livermore, CA 94551
Construction of a High Resolution P1/PAC/BAC Map in the Distal Long Arm of Chromosome 5 for Direct Genomic Sequencing
Ze Peng, Steve Lowry, Duncan Scott, Yiwen Zhu, Eddy Rubin and Jan-Fang Cheng
Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
An Integrated Genetic and Physical Map of Human Chromosome 19: A Resource for Large Scale Genomic Sequencing and Gene Identification
L.A. Gordon, A. Georgescu, M. Christensen, S. Ross, L. Woo, L.K. Ashworth, H. W. Mohrenweiser, A.V. Carrano and A. S. Olsen
Human Genome Center, Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, Livermore, CA 94550
Mapping by Two-Dimensional Hybridization
Cliff S. Han, Mark O. Mundt, Linda J. Meincke, Judy G. Tesmer, Robert K. Moyzis, Larry L. Deaven and Norman A. Doggett
Life Sciences Division and Center for Human Genome Studies, Los Alamos National Laboratory, Los Alamos, NM 87545
Estimates of Gene Densities in Human Chromosome Bands
Norman A. Doggett, Robert D. Sutherland and David C. Torney
Theoretical Division, Life Sciences Division, and OHER Joint Genome Institute, Los Alamos National Laboratory, Los Alamos, NM
Mapping and Functional Analysis of the Mouse Genome
Dabney K. Johnson, Edward J. Michaud, and Monica J. Justice
Mammalian Genetics Section, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-8080
The Albino (c) Region of Mouse Chr 7: A Model for Mammalian Functional Genomics
M.J. Justice¹, E.M. Rinchik², D.A. Carpenter¹, S.E. Thomas¹, and D.K. Johnson¹
¹Mammalian Genetics Section, Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831
²Sarah Lawrence College, Bronxville, New York 10708
Comparative Mapping and Expression Study of Two H19q13.4 Zinc-Finger Gene Clusters in Man and Mouse
Joomyeong Kim, Mark Shannon, Linda Ashworth, Elbert Branscomb, and Lisa Stubbs
Human Genome Center, Lawrence Livermore National Laboratory, Livermore, CA 94551.
One Origin of Man: Primate Evolution Through Genome Duplication
Julie R. Korenberg, Xiao-Ning Chen, Steve Mitchell, Rajesh Puri, Zheng-Yang Shi and Dean Yimlamai
Medical Genetics Birth Defects Center, The CSMC Burns & Allen Research Institute, UCLA School of Medicine, Los Angeles, CA
Third-Strand In Situ Hybridization (TISH) to Non-Denatured Metaphase Spreads and Interphase Nuclei
Marion D. Johnson and Jacques R. Fresco
Princeton University/Washington Road/Princeton, NJ 08544
New Male-Specific, Polymorphic Tetranucleotide Microsatellites from the Human Y Chromosome
P. Scott White¹, Owatha L. Tatum^1,2, Larry Deaven¹, Jonathan L. Longmire¹
¹Genomics Group and Center for Human Genome Studies, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, NM 87545 and ²Dept. of Biological Sciences, Texas Tech University, Lubbock, TX 79409
In Vivo Libraries of the Human Genome in Mice as a Reagent to Sift Genomic Regions for Function
Rubin, E.M., Zhu, Y., Fraser, K., Ueda, Y., Smith, D.J., Symula, D., Cheng, J.F.
Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
Automatic BAC Contig Assembly by Three-Color Fluorescent Restriction Fragments
Y. Ding, M. Johnson, Y. Chen, J. Colayco, J. Melnyk, S. Khan, D. Gilbert, and H. Shizuya
Division of Biology, Caltech, Pasadena, CA 91125, PE Applied Biosystems, Foster City, CA 94404
Construction and Characterization of New BAC Libraries
Y. Sheng, Y-J. Chen, C. Neal, and H. Shizuya
Division of Biology, Caltech, Pasadena, CA 91125
Completing the BAC-Based Physical Map of Human Chromosome 22
Holger Schmitt, Mitzi Shpak, Yan Ding, Melvin Simon, and Hiroaki Shizuya
Division of Biology, Caltech, Pasadena, CA 91125
A Subdermal Physiological Monitoring System For Mass Screening Mice In Gene Expression Studies
M. N. Ericson, D. K. Johnson, R. S. Burlage, T. L. Ferrell, D. E. McMillan, K. G. Falter, A. D. McMillan, S. F. Smith, G. E. Jellison, and C. L. Britton, Jr.
Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006
HLA Genotype Analysis of Chronic Beryllium Disease Sensitivity
P. Scott White, Michelle Petrovic, Owatha L. Tatum, Nancy Lehnert, Usha S-Nair, Zaolin Wang, Larry L. Deaven, and Babetta Marrone
Los Alamos National Laboratory, Life Sciences Division and Center for Human Genome Studies, Los Alamos, New Mexico 87545
A New Program to Develop a High-Resolution, High-Throughput Tomographic Imaging System for Mutagenized Mouse Phenotype Screening
M.J. Paulus, H. Sari-Sarraf, D.K. Johnson, D.H. Lowndes, M. L. Simpson, C.L. Britton, Jr., F.F. Knapp, Jr., J.S. Hicks
Oak Ridge National Laboratory, Oak Ridge, TN 37831-6006
Quantitative Detection of Nucleic Acids by Invasive Cleavage of Oligonucleotide Probes
Jeff G. Hall, Andrea L. Mast, Victor Lyamichev, James R. Prudent, Michael W. Kaiser, Tsetska Takova, Bob Kwiatkowski, Bruce Neri, and Mary Ann D. Brow
Third Wave Technologies, Inc., 2800 S. Fish Hatchery Rd., Madison, WI 53711
Quantitative DNA Fiber Mapping (QDFM) Techniques for Physical Map Construction and Quality Control*
Heinz-Ulrich G. Weier, Stanislav Volik, Jenny Wu, Thomas Duell, Mei Wang, Ung-Jin Kim¹, Jan-Fang Cheng and Joe W. Gray
Resource for Molecular Cytogenetics and Human Genome Center, Life Sciences Division, University of California, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, and ¹California Institute of Technology, Pasadena, CA
Analysis of DNA Sequence Copy Number Variation in Breast Tumors and HPV16-Immortalized Cell Lines Using Comparative Genomic Hybridization to DNA Microarrays
D. G. Albertson¹, R. Segraves², D. Sudar¹, S. Clark², C. Collins¹, C. Chen², W.-L. Kuo², D. Kowbel¹, S. H. Dairkee³, I. Poole⁴, M. Dürst⁵, J. W. Gray^1,2 , D. Pinkel^1,2
¹ E. O. Lawrence Berkeley National Laboratory,
²University of California San Francisco,
³Geraldine Brush Cancer Research Institute,
⁴Vysis, Inc., ⁵Deutsches Krebsforschungszentrum
Molecular Anatomy of a 20q13.2 Breast Cancer Amplicon
C. Collins¹, J. Rommens², D. Kowbel¹, G. Nonet¹, L. Stubbs³, M. Shannon³, M. Wernick¹, J. Froula¹, G. Hutchinson⁴, T. Godfrey⁵, D. Polikoff¹, T. Cloutier¹, K. Myambo¹, C. Martin¹, M. Palazzolo¹, Dan Pinkel^1,5, D. Albertson^1,5, and J.W. Gray^1,5
¹ Lawrence Berkeley National Laboratory, Berkeley, CA
² Hospital for Sick Children, Toronto, Canada
³ Lawrence Livermore National Laboratory, Livermore CA
⁴ RabbitHutch Biotechnology, B.C. Canada
⁵ University of California Cancer Center, San Francisco
3D Genetic Analysis of Thick Tissue Specimens
SJ Lockett⁺, C Ortiz de Solorzano⁺, A Jones⁺, E Rodriguez⁺, K Chin^o, C Fernandez^o, D Sudar⁺, D Pinkel^+o, JW Gray^+o
0⁺Resource for Molecular Cytogenetics, Life Sciences Division, Ernest Orlando Lawrence Berkeley National Laboratory, Berkeley, CA 94720, ^oCancer Center, University of California, San Francisco, CA 94143
New Single Molecule Approaches to Genomic Analysis: Optical Mapping
David C. Schwartz, Thomas Anantharaman, Christopher Aston, Ginger Clarke, Stephanie Delobette, Eileen Dimalanta, Joanne Edington, Ariella Evenzahav, Veronica Gibaja, Yuzhi Gao, Joe Giacalone, Catharina Hiort, Edward Huff, Junping Jing, John Lai, Ernest Lee, Jieyi Lin, Bud Mishra, Lei Ni, Brett Porter, Rong Qi, Arvind Ramanathan, Jason Reed, Akhtar Samad, Alex Shenker, Yianni Skiadas, Hui Wang, Jonathan J. Vafai, Weining Wang, Hongjuan Zhao
New York University

Mapping and Resources Table of Contents of abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI November 9-13, 1997, Santa Fe, NM

Table of Contents

of abstracts from the DOE Human Genome Program Contractor-Grantee Workshop VI November 9-13, 1997, Santa Fe, NM

Mapping and Resources
Table of Contents

of abstracts from the
DOE Human Genome Program Contractor-Grantee Workshop VI
November 9-13, 1997, Santa Fe, NM

of abstracts from the
DOE Human Genome Program Contractor-Grantee Workshop VI
November 9-13, 1997, Santa Fe, NM