CSD OBMS Hurst

Yang, X.; Tschaplinski, T.J.; Hurst, G.B.; Jawdy, S.; Abraham, P.E.; Lankford, P.K.; Adams, R.M.; Shah, M.B.; Hettich, R.L.; Kalluri, U.C.; Gunter, L.E.; Pennacchio, C.; Tuskan, G.A. “Discovery and annotation of small proteins using genomics, proteomics and computational approaches.” Genome Research 2011, Published in Advance March 2. doi:10.1101/gr.109280.110.

Giannone, R.J.; McDonald, W.H.; Hurst, G.B.; Shen, R.-F.; Wang, Y.; Liu, Y. “The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1.” PLOS ONE 2010, 5, e12409. doi:10.1371/journal.pone.0012407.

Kalluri, U.C., Hurst, G.B., Lankford, P.K., Ranjan, P., and Pelletier, D.A. ”Shotgun proteome profile of Populus developing xylem.” Proteomics 2009, 9, 4871-4880. DOI 10.1002/pmic.200800854.

Yang, S., Pappas, K.M., Hauser, L.J., Land, M.L., Chen, G.L., Hurst, G.B., Pan, C., Kouvelis, V.N., Typas, M.A., Pelletier, D.A., Klingeman, D.M., Chang, Y.J., Samatova, N.F., Brown, S.D.“Improved genome annotation for Zymomonas mobilis.” Nature Biotechnology 2009, 27, 893-894.

Edwards, A.N., Fowlkes, J.D., Owens, E.T., Standaert, R.F., Pelletier, D.A., Hurst, G.B., Doktycz, M.J., Morrell-Falvey, J.L. “An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.” Anal. Biochem. 2009, 395,166-177.

Hervey, W.J. IV, Khalsa-Moyers, G., Lankford, P.K., Owens, E.T., McKeown, C.K., Lu, T.-Y., Foote, L.J., Asano, K.G., Morrell-Falvey, J.L., McDonald, W.H., Pelletier, D.A., Hurst, G.B., “Evaluation of Affinity-Tagged Protein Expression Strategies using Local and Global Isotope Ratio Measurements.” J. Proteome Research 2009, 8, 3675-3688. DOI 10.1021/pr801088f.

Raman, B., Pan, C., Hurst, G.B., Rodriguez, M. Jr., McKeown, C.K., Lankford, P.K., Samatova, N.F., Mielenz, J.R. “Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis.” PloS One 2009, 4(4): e5271. doi: 10.1371/journal.pone.0005271.

Taylor, R.C., Singhal, M, Daly, D.S., Gilmore, J., Domico, K., White, A.M., Auberry, D.L., Auberry, K.J., Hooker, B., Hurst, G., McDermott, J., McDonald, W.H., Pelletier, D., Schmoyer, D., Cannon, W.R. “An analysis pipeline for the inference of protein-protein interaction networks,” Int. J. Data Mining and Bioinformatics (accepted, 2009).

Sharp, J.L., Borkowski, J.J., Schmoyer, D.D., Daly, D.S., Purvine, S., Cannon, W.R., Hurst, G.B., “Statistically Appraising Process Quality of Affinity-Isolation Experiments,” Comp. Stat. Data Analysis 2009, 53, 1720-1726.

Pelletier, D.A., Hurst, G.B., Foote, L.J., Lankford, P.K., McKeown, C.K., Lu, T.-Y., Schmoyer, D.D., Shah, M.B., Hervey, W.J. IV, McDonald, W.H., Hooker, B.S., Cannon, W.R., Daly, D.S., Gilmore, J.M., Wiley, H.S., Auberry, D.L., Wang, Y., Larimer, F.W., Kennel, S.J., Doktycz, M.J., Morrell-Falvey, J.L., Owens, E.T., Buchanan, M.V., “A general system for studying protein-protein interactions in gram-negative bacteria,” J. Proteome Research 2008, 7, 3319-3328.

Sharp, J.L., Anderson, K.K., Hurst, G.B., Daly, D.S., Pelletier, D.A., Cannon, W.R., Auberry, D.L., Schmoyer, D.D., McDonald, W.H., White, A.M., Hooker, B.S., Victry, K.D., Buchanan, M.V., Kery, V., Wiley, H.S. “Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays,” J. Proteome Research 2007, 6, 3788-3795.

Hervey, W.J. IV, Strader, M.B., Hurst, G.B. “Comparison of Digestion Protocols for Microgram Quantities of Enriched Protein Samples,” J. Proteome Research 2007, 6, 3054-3061.

Giannone, R.J., McDonald, W.H., Hurst, G.B., Huang, Y., Liu, Y., Wang, Y., “A dual-tagging system for affinity purification of mammalian protein complexes,” BioTechniques 2007, 43, 296-302.

Pan, C., Kora, G., Tabb, D.L., Pelletier, D.A., McDonald, W.H., Hurst , G.B., Hettich, R.L., and Samatova, N.F., “Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics,” Anal. Chem. 2006, 78, 7110-7120.

Pan, C., Kora, G., McDonald, W.H., Tabb, D.L., VerBerkmoes, N.C., Hurst, G.B., Pelletier, D.A., Samatova, N.F. and Hettich, R.L., “ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation,” Anal. Chem. 2006, 78, 7121-7131.

Tabb, D.L., Shah, M.B., Strader, M.B., Connelly, H.M., Hettich, R.L., and Hurst, G.B. “Determination of Peptide and Protein Ion Charge States by Fourier Transformation of Isotope-Resolved Mass Spectra,” J. Am. Soc. Mass Spectrom. 2006, 17, 903-915.

VerBerkmoes, N.C., Shah, M.B., Lankford, P.K., Pelletier D.A., Strader, M.B., Tabb, D.L., McDonald, W.H., Barton, J.W., Hurst, G.B., Hauser, L., Davison, B.H., Beatty, J.T., Harwood, C.S., Tabita, F.R., Hettich, R.L., and Larimer, F.W. “Determination and comparison of the baseline proteome of the versatile microbe Rhodopseudomonas palustris under its major metabolic states,” J. Proteome Res. 2006, 5, 287-298.

Strader, M.B., Tabb, D.L., Hervey, W.J., Pan, C., and Hurst, G.B.“Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems,” Anal. Chem. 2006, 78, 125-134.

Fridman, T., Protopopescu, V., Hurst, G., Borziak, A, and Gorin, A., “Optimal construction of theoretical spectra for MS/MS spectra identification,” OMICS 2005, 9, 380-390.

Son, C.D., Sargsyan, H., Hurst, G. B., Naider, F., and Becker, J.M. “Analysis of ligand-receptor cross-linked fragments by mass spectrometry,” J. Peptide Research 2005, 65, 418-426.

T. Fridman, J. Raxumovskaya, N. Verberkmoes, G. Hurst, V. Protopopescu, and Y. Xu, "The Probability Distribution for a Random Match Between an Experimental-Theoretical spectral Pair in Tandem Mass Spectrometry," J. Bioinformatics and Comp Biology, 2005, 3, 455-476.

N.A. Horn, G.B. Hurst, A. Mayasundari, N.A. Whittemore, E.H. Sepersu and C.B. Peterson, “Assignment of the Four Disulfides in the N-terminal Somatomedin B Domain of Vitronectin: The Disulfide-bonding Pattern of the Domain Isolated from Human Plasma Vitronectin Differs from its Recombinant Counterpart,” J. Biol. Chem. 2004, 279, 35867-35878.

M.B. Strader, N.C. VerBerkmoes, D.L. Tabb, H.M. Connelly, J.W. Barton, B.D. Bruce, D.A. Pelletier, B.H. Davison, R.L. Hettich, F.W. Larimer, and G.B. Hurst, “Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an Integrated “Top-Down” and “Bottom-Up” Mass Spectrometric Approach,” J. Proteome Research 2004, 3, 965-978..

G.B. Hurst, T.K. Lankford and S.J. Kennel, “Mass Spectrometric Detection of Affinity Purified Crosslinked Peptides,” J. Am. Soc. Mass Spectrom. 2004, 15, 832-839.

S.A. McLuckey, J. Wu, J.L. Bundy, J.L. Stephenson, Jr., G.B. Hurst, “Oligonucleotide Mixture Analysis via Electrospray and Ion/Ion Reactions in a Quadrupole Ion Trap,” Anal. Chem. 2002, 74, 976-984.

N.C. VerBerkmoes, M.B. Strader, R.D.Smiley, E.E. Howell, G.B. Hurst, R.L. Hettich, J.L. Stephenson, Jr., “Intact Protein Analysis for Site-Directed Mutagenesis Overexpression Products: Plasmid-Encoded R67 Dihydrofolate Reductase,” Anal. Biochem. 2002, 305, 68-81.

Y. Kim, G.B. Hurst, “Study of Matrix and Polymer Substrate in MALDI-TOF Mass Spectrometry of DNA,” Microchem. J. 2001, 70, 219-228.

Y. Kim, G.B. Hurst, M.J. Doktycz, M.V. Buchanan, “Improving Spot Homogeneity by using Polymer Substrates in Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry of Oligonucleotides,” Anal. Chem. 2001, 73, 2617-2624.

W. Zhao, K.M. Murdoch, N.J. Condon, D.M. Besemann, K.A. Meyer, P.C. Chen, J.P. Hamilton, A. Zilian, M.J. Labuda, D.E. Thompson, R.J. Carlson, G.B. Hurst, M.T. Riebe, J.K. Steehler, J.C. Wright, “Comparisons Between 2D Doubly Vibrationally Enhanced Four Wave Mixing and Site Selective Spectroscopy,” J. Luminescence 2000, 87-89, 90-95.

S.J. Kennel, S. Mirzadeh, G.B. Hurst, L.J. Foote, T.K. Lankford, K.A. Glowienka, L.L. Chappell, J.R. Kelso, S.M. Davern, A. Safavy and M.W. Brechbiel, "Labeling and Distribution of Linear Peptides Identified Using in vivo Phage Display Selection for Tumors,” Nucl. Med. Biol. 2000, 27, 821-825.

G.B. Hurst, S.J. Kennel, L.J. Foote and M.V. Buchanan, “Analysis for TNF-a using Solid-Phase Affinity Capture with Radiolabel and MALDI-MS Detection,” Anal. Chem. 1999, 71, 4727-4733.

L.A. Pinnaduwage, K. Nagesha, Y.F. Zhu, M.V. Buchanan and G.B. Hurst, "Laser-Enhanced Negative Ion Mass Spectroscopy for Weakly-Electron-Attaching Species," Int J. Mass Spectrom. 1999, 193, 77-86.

A.A. Puretzky, D.B. Geohegan, G.B. Hurst, M.V. Buchanan and B.S. Luk’yanchuk, “Imaging of Vapor Plumes Produced by Matrix Assisted Laser Desorption: A Plume Sharpening Effect,” Phys. Rev. Lett. 1999, 83, 444-447.

D.J. Butcher, D.E. Goeringer and G.B. Hurst, "Real-time Determination of Aromatics in Automobile Exhaust by Single-Photon Ionization Ion Trap Mass Spectrometry," Anal. Chem. 1999, 71, 489-496.

G.B. Hurst, K. Weaver, M.J. Doktycz, M.V. Buchanan, A.M. Costello, and M.E. Lidstrom, "MALDI-TOF Analysis of Polymerase Chain Reaction Products from Methanotrophic Bacteria," Anal. Chem. 1998, 70, 2693-2698.

P.F. Britt, G.B. Hurst and M.V. Buchanan, "Synthesis of Electrophore-Labeled Oligonucleotides and Characterization by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry," J. Mass Spectrom. 1996, 31, 661-668.

G.B. Hurst, M.J. Doktycz, A.A. Vass, and M.V. Buchanan, "Detection of Bacterial DNA Polymerase Chain Reaction Products by Matrix-assisted Laser Desorption/Ionization Mass Spectrometry," Rapid Commun. Mass Spectrom. 1996, 10, 377-382.

L. Tang, R.L. Hettich, G.B. Hurst and M.V. Buchanan, "An Electrostatic Ion Guide Interface for Combining Electrospray with Fourier Transform Ion Cyclotron Resonance Mass Spectrometry," Rapid Commun. Mass Spectrom. 1995, 9, 731-734.

M.J. Doktycz, G.B Hurst, S. Habibi-Goudarzi, S.A. McLuckey, K. Tang, C.H. Chen, M. Uziel, K.B. Jacobson, R.P. Woychik and M.V. Buchanan, "Analysis of Polymerase Chain Reaction-Amplified DNA Products by Mass Spectrometry Using Matrix-Assisted Laser Desorption and Electrospray: Current Status," Anal. Biochem. 1995, 230, 205-214.

E.A. Stemmler, M.V. Buchanan, G.B. Hurst, and R.L. Hettich, "Analysis of Modified Oligonucleotides by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Mass Spectrometry," Anal. Chem. 1995, 67, 2924-2930.

R. L. Hettich, G. B. Hurst, M. V. Buchanan, and E. A. Stemmler, "Characterization of Polycyclic Aromatic Hydrocarbon Dihydrodiol Epoxide DNA Adducts Using Matrix Assisted Laser Desorption Mass Spectrometry," Polycyclic Aromatic Compounds, M. Zander, ed., 1994, 6, 95-102.

E. A. Stemmler, M. V. Buchanan, G. B. Hurst, and R. L. Hettich, "The Structural Characterization of Polycyclic Aromatic Hydrocarbon Dihydrodiol Epoxide DNA Adducts Using Laser Desorption/Ionization Fourier Transform Mass Spectrometry," Anal. Chem. 1994, 66, 1274-1285.

E. A. Stemmler, R. L. Hettich, G. B. Hurst, and M. V. Buchanan, "Matrix-Assisted Laser Desorption/Ionization Fourier Transform Mass Spectrometry of Oligodeoxyribonucleotides," Rapid Commun. Mass Spectrom. 1993, 7, 828-836.

G.B. Hurst and J.C. Wright, "Vibronic Spectroscopy of Amorphous Materials using Higher Order, Multiresonant Coherent Anti-Stokes Raman Spectroscopy," J. Chem. Phys. 1992, 97, 3940-3949.

J.C. Wright, R.J. Carlson, G.B. Hurst, J.K. Steehler, M.T. Riebe, B.B. Price, D.C. Nguyen, S.H. Lee, “Molecular, Multiresonant Coherent 4-Wave-Mixing Spectroscopy,” Int. Rev. Phys. Chem. 1991, 10, 349-390.

G.B. Hurst and J.C. Wright, "Nonlinear Line Narrowing of Excited State Resonances in Perylene Doped Poly(methylmethacrylate) using Multiply-Enhanced Nonparametric Spectroscopy," J. Chem. Phys. 1991, 95, 1479-1486.

L.B. Yeatts, Jr., G.B. Hurst and J.E. Caton, "Determination of Hydroxybenzenes in Fossil Fuel-Derived Liquids and in Associated Process Waters," Anal. Chim. Acta 1983, 151, 349-358.